(Q39365291)

11 September 2017

title

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses (English)

1 reference

11 September 2017

1 reference

1 reference

6

1 reference

11 September 2017

18

1 reference

11 September 2017

22

Peer Bork

0 references

Shinichi Sunagawa

4

Shinichi Sunagawa

0 references

Julie Poulain

10

Julie Poulain

0 references

Stéphane Pesant

11

Stéphane Pesant

0 references

Stefanie Kandels-Lewis

12

Stefanie Kandels-Lewis

0 references

Céline Dimier

13

Céline Dimier

0 references

Adriana Alberti

Adriana Alberti

17

0 references

Bas E. Dutilh

Bas E Dutilh

3

0 references

Elena Lara

Elena Lara

9

0 references

Melissa Beth Duhaime

Melissa B Duhaime

5

0 references

Silvia G. Acinas

Silvia G Acinas

23

0 references

Josep M. Gasol

Josep M Gasol

19

0 references

Corinne Cruaud

16

Corinne Cruaud

1 reference

11 September 2017

24

Patrick Wincker

1 reference

11 September 2017

20

Dolors Vaqué

1 reference

11 September 2017

7

Bonnie T Poulos

1 reference

11 September 2017

14

Marc Picheral

1 reference

11 September 2017

15

Sarah Searson

1 reference

11 September 2017

Stefanie Kandels-Lewis

12

Stefanie Kandels-Lewis

1 reference

11 September 2017

2

Jennifer R Brum

1 reference

11 September 2017

8

Natalie Solonenko

1 reference

11 September 2017

25

Matthew B Sullivan

1 reference

11 September 2017

Tara Oceans Coordinators

21

Tara Oceans Coordinators

1 reference

11 September 2017

Simon Roux

1

1 reference

11 September 2017

language of work or name

English

0 references

publication date

21 September 2016

1 reference

11 September 2017

number of pages

5

1 reference

inferred from page(s)

published in

Nature

1 reference

11 September 2017

volume

537

1 reference

11 September 2017

issue

7622

1 reference

11 September 2017

page(s)

689-693

1 reference

https://scigraph.springernature.com/pub.10.1038/nature19366

11 September 2017

exact match

0 references

cites work

Comparative metagenomics of microbial traits within oceanic viral communities

1 reference

12 December 2020

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

1 reference

12 December 2020

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

1 reference

12 December 2020

Characterization of a thermophilic bacteriophage of Geobacillus kaustophilus

1 reference

12 December 2020

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

1 reference

12 December 2020

P(II) signal transduction proteins, pivotal players in microbial nitrogen control

1 reference

12 December 2020

Genomes of marine cyanopodoviruses reveal multiple origins of diversity.

1 reference

12 December 2020

FastTree 2--approximately maximum-likelihood trees for large alignments

1 reference

12 December 2020

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

1 reference

12 December 2020

Illuminating structural proteins in viral "dark matter" with metaproteomics

1 reference

12 December 2020

Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans

1 reference

12 December 2020

Fast gapped-read alignment with Bowtie 2

1 reference

12 December 2020

Complete genome sequences of two Persicivirga bacteriophages, P12024S and P12024L

1 reference

12 December 2020

Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes

1 reference

12 December 2020

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

1 reference

12 December 2020

Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity

1 reference

12 December 2020

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

1 reference

12 December 2020

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

1 reference

12 December 2020

The microbial engines that drive Earth's biogeochemical cycles.

1 reference

12 December 2020

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

1 reference

12 December 2020

Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences.

1 reference

12 December 2020

Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences.

1 reference

12 December 2020

Easyfig: a genome comparison visualizer

1 reference

12 December 2020

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

1 reference

12 December 2020

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

12 December 2020

Diverse CRISPRs evolving in human microbiomes.

1 reference

12 December 2020

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

1 reference

12 December 2020

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

1 reference

12 December 2020

Ocean plankton. Patterns and ecological drivers of ocean viral communities

1 reference

12 December 2020

Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria

1 reference

12 December 2020

Viral dark matter and virus-host interactions resolved from publicly available microbial genomes

1 reference

12 December 2020

Genomic and phenotypic characterization of Rhizobium gallicum phage vB_RglS_P106B.

1 reference

12 December 2020

Computational approaches to predict bacteriophage-host relationships.

1 reference

12 December 2020

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

1 reference

12 December 2020

Global diversity and biogeography of deep-sea pelagic prokaryotes

1 reference

12 December 2020

I-TASSER: a unified platform for automated protein structure and function prediction

1 reference

12 December 2020

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

12 December 2020

Rising to the challenge: accelerated pace of discovery transforms marine virology

1 reference

12 December 2020

Photosynthesis genes in marine viruses yield proteins during host infection

1 reference

12 December 2020

Pfam: the protein families database

1 reference

12 December 2020

Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions

1 reference

12 December 2020

Abundant SAR11 viruses in the ocean.

1 reference

12 December 2020

Virus population dynamics and acquired virus resistance in natural microbial communities

1 reference

12 December 2020

phangorn: phylogenetic analysis in R

1 reference

12 December 2020

Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome

1 reference

12 December 2020

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

1 reference

12 December 2020

A protein trisulfide couples dissimilatory sulfate reduction to energy conservation

1 reference

12 December 2020

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

1 reference

12 December 2020

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

1 reference

12 December 2020

A holistic approach to marine eco-systems biology

1 reference

12 December 2020

Reticulate representation of evolutionary and functional relationships between phage genomes

1 reference

12 December 2020

Ocean plankton. Structure and function of the global ocean microbiome

1 reference

12 December 2020

Accelerated Profile HMM Searches

1 reference

12 December 2020

Isolation, growth and genome of the Rhodothermus RM378 thermophilic bacteriophage.

1 reference

12 December 2020

ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins

1 reference

12 December 2020

Open science resources for the discovery and analysis of Tara Oceans data

1 reference

12 December 2020

An efficient algorithm for large-scale detection of protein families

1 reference

12 December 2020

Sulfite oxidation in the purple sulfur bacterium Allochromatium vinosum: identification of SoeABC as a major player and relevance of SoxYZ in the process

1 reference

12 December 2020

A simple and efficient method for concentration of ocean viruses by chemical flocculation

1 reference

12 December 2020

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

1 reference

12 December 2020

P(II) signal transduction proteins: nitrogen regulation and beyond

1 reference

12 December 2020

Prokaryotic sulfur oxidation

1 reference

12 December 2020

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

1 reference

12 December 2020

MOCAT: a metagenomics assembly and gene prediction toolkit

1 reference

12 December 2020

A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes

1 reference

12 December 2020

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

1 reference

12 December 2020

The "bacterial heterodisulfide" DsrC is a key protein in dissimilatory sulfur metabolism.

1 reference

12 December 2020

VirSorter: mining viral signal from microbial genomic data

1 reference

12 December 2020

MRBAYES: Bayesian inference of phylogenetic trees

1 reference

12 December 2020

The Phage Proteomic Tree: a genome-based taxonomy for phage

1 reference

12 December 2020

Physiology and diversity of ammonia-oxidizing archaea

1 reference

12 December 2020

Sulfur oxidation genes in diverse deep-sea viruses

1 reference

12 December 2020

Genomic variation landscape of the human gut microbiome

1 reference

12 December 2020

Viruses manipulate the marine environment

1 reference

12 December 2020

Twelve previously unknown phage genera are ubiquitous in global oceans

1 reference

12 December 2020

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

1 reference

12 December 2020

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

1 reference

12 December 2020

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

1 reference

12 December 2020

Expanding the marine virosphere using metagenomics

1 reference

12 December 2020

Identifiers

DOI

10.1038/NATURE19366

1 reference

11 September 2017

1 reference