(Q39373897)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

A new type of IRES within gag coding region recruits three initiation complexes on HIV-2 genomic RNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Nathalie Chamond

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Cécile Hélène Herbreteau

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Théophile Ohlmann

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

author name string

Laurie James

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Nathalie Ulryck

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Bruno Sargueil

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

language of work or name

English

0 references

publication date

6 December 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

volume

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

page(s)

1367-1381

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

13 February 2020

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2831325/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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1 reference

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The pathway of hepatitis C virus mRNA recruitment to the human ribosome

11 September 2017

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An atypical IRES within the 5' UTR of a dicistrovirus genome.

11 September 2017

1 reference

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In vitro expression of the HIV-2 genomic RNA is controlled by three distinct internal ribosome entry segments that are regulated by the HIV protease and the Gag polyprotein

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Viral IRES RNA structures and ribosome interactions

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

11 September 2017

1 reference

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11 September 2017

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RNA structure modulates splicing efficiency at the human immunodeficiency virus type 1 major splice donor

11 September 2017

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11 September 2017

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HIV-1 reverse transcription: close encounters between the viral genome and a cellular tRNA.

11 September 2017

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11 September 2017

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11 September 2017

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Structure of the ribosome-bound cricket paralysis virus IRES RNA.

11 September 2017

1 reference

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Retrovirus translation initiation: Issues and hypotheses derived from study of HIV-1

11 September 2017

1 reference

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Specific functional interactions of nucleotides at key -3 and +4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex

11 September 2017

1 reference

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Selection and evolution of NTP-specific aptamers.

11 September 2017

1 reference

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Dimerization of retroviral RNA genomes: an inseparable pair.

11 September 2017

1 reference

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RNA interactions in the 5' region of the HIV-1 genome

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

In vitro selection of second site revertants analysis of the hairpin ribozyme active site

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Generation of protein isoform diversity by alternative initiation of translation at non-AUG codons.

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

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11 September 2017

1 reference

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The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection

11 September 2017

1 reference

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Destiny of Unspliced Retroviral RNA: Ribosome and/or Virion?

11 September 2017

1 reference

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In vitro evidence for a long range pseudoknot in the 5'-untranslated and matrix coding regions of HIV-1 genomic RNA

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

The human immunodeficiency virus type 1 gag gene encodes an internal ribosome entry site

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Translation is not required To generate virion precursor RNA in human immunodeficiency virus type 1-infected T cells.

11 September 2017

1 reference

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The role of 5'-leader length, secondary structure and PABP concentration on cap and poly(A) tail function during translation in Xenopus oocytes

11 September 2017

1 reference

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Analysis of the functional role of a G.A sheared base pair by in vitro genetics

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Probing RNA structure and RNA-ligand complexes with chemical probes

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Human immunodeficiency virus types 1 and 2 differ in the predominant mechanism used for selection of genomic RNA for encapsidation

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Primer extension analysis of eukaryotic ribosome-mRNA complexes

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Recognition of AUG and alternative initiator codons is augmented by G in position +4 but is not generally affected by the nucleotides in positions +5 and +6.

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

The human immunodeficiency virus type 1 5' packaging signal structure affects translation but does not function as an internal ribosome entry site structure

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Translation initiation at non-AUG triplets in mammalian cells

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Analysis of 40 S and 80 S complexes with mRNA as measured by sucrose density gradients and primer extension inhibition

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

The leader of human immunodeficiency virus type 1 genomic RNA harbors an internal ribosome entry segment that is active during the G2/M phase of the cell cycle

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

An internal ribosome entry site promotes translation of a novel SIV Pr55(Gag) isoform

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

RNA secondary structure of the feline immunodeficiency virus 5'UTR and Gag coding region

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Differential factor requirement to assemble translation initiation complexes at the alternative start codons of foot-and-mouth disease virus RNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

The fidelity of translation initiation: reciprocal activities of eIF1, IF3 and YciH.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

An internal ribosome entry segment promotes translation of the simian immunodeficiency virus genomic RNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Lentiviral RNAs can use different mechanisms for translation initiation

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Structural basis for ribosome recruitment and manipulation by a viral IRES RNA.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

HIV-2 genomic RNA contains a novel type of IRES located downstream of its initiation codon.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

A cross-kingdom internal ribosome entry site reveals a simplified mode of internal ribosome entry.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Conversion of 48S translation preinitiation complexes into 80S initiation complexes as revealed by toeprinting.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Initiation of protein synthesis from the A site of the ribosome

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831325

Cooperative and Specific Binding of Vif to the 5′ Region of HIV-1 Genomic RNA

21 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1109

The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19969542

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Influence of mRNA secondary structure on binding and migration of 40S ribosomal subunits

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19969542

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP1109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19969542%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

19969542

1 reference