(Q39532495)

12 September 2017

title

ProteoConnections: a bioinformatics platform to facilitate proteome and phosphoproteome analyses (English)

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12 September 2017

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2

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12 September 2017

5

Pierre Thibault

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12 September 2017

Mathieu Courcelles

1

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12 September 2017

Laure Voisin

series ordinal

3

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12 September 2017

Sylvain Meloche

series ordinal

4

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12 September 2017

publication date

31 May 2011

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12 September 2017

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12 September 2017

volume

11

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12 September 2017

issue

13

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12 September 2017

page(s)

2654-2671

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A uniform proteomics MS/MS analysis platform utilizing open XML file formats

12 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

TOPP--the OpenMS proteomics pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

HTAPP: high-throughput autonomous proteomic pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PRISM: a data management system for high-throughput proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

myProMS, a web server for management and validation of mass spectrometry-based proteomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PrestOMIC, an open source application for dissemination of proteomic datasets by individual laboratories

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PeptideDepot: flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Qupe--a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

The need for a public proteomics repository

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PRIDE: new developments and new datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Open source system for analyzing, validating, and storing protein identification data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Human Proteinpedia enables sharing of human protein data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

NCBI Peptidome: a new public repository for mass spectrometry peptide identifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Phospho.ELM: a database of phosphorylation sites--update 2008.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PhosphoPep--a database of protein phosphorylation sites in model organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

SysPTM: a systematic resource for proteomic research on post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

The KEGG resource for deciphering the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Combined enzymatic and data mining approaches for comprehensive phosphoproteome analyses: application to cell signaling events of interferon-gamma-stimulated macrophages

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

The International Protein Index: an integrated database for proteomics experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

NCBI Reference Sequences: current status, policy and new initiatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Locating proteins in the cell using TargetP, SignalP and related tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

InterPro: the integrative protein signature database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Artifactual sulfation of silver-stained proteins: implications for the assignment of phosphorylation and sulfation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

A curated compendium of phosphorylation motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PepCyber:P~PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

NetworKIN: a resource for exploring cellular phosphorylation networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Discovery of phosphorylation motif mixtures in phosphoproteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

SCRATCH: a protein structure and structural feature prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

NLSdb: database of nuclear localization signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Nuclear export signal consensus sequences defined using a localization-based yeast selection system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Weak functional constraints on phosphoproteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Identification of common molecular subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Improved tools for biological sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

InParanoid 6: eukaryotic ortholog clusters with inparalogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

STRING 8--a global view on proteins and their functional interactions in 630 organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Insights into the role of histone H3 and histone H4 core modifiable residues in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

The regulation of AP-1 activity by mitogen-activated protein kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Phosphorylation of spliceosomal protein SAP 155 coupled with splicing catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

CDK phosphorylation of a novel NLS-NES module distributed between two subunits of the Mcm2-7 complex prevents chromosomal rereplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Dissecting the signaling events that impact classical nuclear import and target nuclear transport factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

PEST sequences and regulation by proteolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Global identification of O-GlcNAc-modified proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Changes in intracellular calpastatin localization are mediated by reversible phosphorylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Evolution of characterized phosphorylation sites in budding yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Molecular characterization of the evolution of phagosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Regulation of Connexin-43 Gap Junctional Intercellular Communication by Mitogen-activated Protein Kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Casein kinase 1 regulates connexin-43 gap junction assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

Highly selective enrichment of phosphorylated peptides using titanium dioxide

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

LymPHOS: design of a phosphosite database of primary human T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000776

21 January 2018

Identifiers

DOI

10.1002/PMIC.201000776

1 reference

12 September 2017

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