(Q39535265)

12 September 2017

The contribution of 2'-hydroxyls to the cleavage activity of the Neurospora VS ribozyme (English)

1 reference

12 September 2017

0 references

Vanita D Sood

1

1 reference

12 September 2017

Soraya Yekta

series ordinal

2

1 reference

12 September 2017

Richard A Collins

series ordinal

3

1 reference

12 September 2017

language of work or name

English

0 references

publication date

1 March 2002

1 reference

12 September 2017

Nucleic Acids Research

1 reference

12 September 2017

30

1 reference

12 September 2017

5

1 reference

12 September 2017

1132-1138

1 reference

describes a project that uses

12 September 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC101248/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Three metal ions at the active site of the Tetrahymena group I ribozyme

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Probing the role of metal ions in RNA catalysis: kinetic and thermodynamic characterization of a metal ion interaction with the 2'-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

A minor groove RNA triple helix within the catalytic core of a group I intron

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Crystal structure of a hepatitis delta virus ribozyme

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Defining the chemical groups essential for Tetrahymena group I intron function by nucleotide analog interference mapping

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

RNA tertiary structure mediation by adenosine platforms

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Crystal structure of a group I ribozyme domain: principles of RNA packing

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

A long-range pseudoknot is required for activity of the Neurospora VS ribozyme

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Nuclease-resistant chimeric ribozymes containing deoxyribonucleotides and phosphorothioate linkages

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNA

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

A secondary-structure model for the self-cleaving region of Neurospora VS RNA.

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Comparison of binding of mixed ribose-deoxyribose analogues of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: evidence for ribozyme specific interactions with 2' OH groups

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

RNA-mediated ligation of self-cleavage products of a Neurospora mitochondrial plasmid transcript

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Function of specific 2'-hydroxyl groups of guanosines in a hammerhead ribozyme probed by 2' modifications

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Hydrogen bonding in yeast phenylalanine transfer RNA

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Yeast phenylalanine transfer RNA: atomic coordinates and torsion angles

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Structural domains of transfer RNA molecules

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Reactions at the termini of tRNA with T4 RNA ligase

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

A mutant T7 RNA polymerase as a DNA polymerase.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

A crystallographic study of metal-binding to yeast phenylalanine transfer RNA

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Functional equivalence of the uridine turn and the hairpin as building blocks of tertiary structure in the Neurospora VS ribozyme

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Nucleotide analog interference mapping of the hairpin ribozyme: implications for secondary and tertiary structure formation.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

The chemical basis of adenosine conservation throughout the Tetrahymena ribozyme

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Identification of functional domains in the self-cleaving Neurospora VS ribozyme using damage selection.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

DNA and RNA sequence determination based on phosphorothioate chemistry

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Analysis of the role of phosphate oxygens in the group I intron from Tetrahymena

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

The A730 loop is an important component of the active site of the VS ribozyme

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Tertiary structure stability of the hairpin ribozyme in its natural and minimal forms: different energetic contributions from a ribose zipper motif

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Nucleotide sequence requirements for self-cleavage of Neurospora VS RNA.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101248

Identifying RNA minor groove tertiary contacts by nucleotide analogue interference mapping with N2-methylguanosine

21 August 2018

1 reference

12 December 2020

Relationship between 2'-hydroxyls and magnesium binding in the hammerhead RNA domain: a model for ribozyme catalysis

1 reference

12 December 2020

Minimum ribonucleotide requirement for catalysis by the RNA hammerhead domain

1 reference

12 December 2020

Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA

1 reference

12 December 2020

Four ribose 2'-hydroxyl groups essential for catalytic function of the hairpin ribozyme

1 reference

12 December 2020

Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn loop structure

1 reference

12 December 2020

Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis

1 reference

12 December 2020

Inter-domain cross-linking and molecular modelling of the hairpin ribozyme

1 reference

12 December 2020

Complementary sets of noncanonical base pairs mediate RNA helix packing in the group I intron active site

1 reference

12 December 2020

Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/30.5.1132

1 reference

12 September 2017

1 reference

12 September 2017

PubMed publication ID

11861903

1 reference