(Q39705218)

English

Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

prion protein family

0 references

1 reference

based on heuristic

inferred from title

David A Fitzpatrick

3

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

2

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

author name string

Edgar M Medina

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

publication date

22 September 2011

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Journal of Molecular Evolution

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

73

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

116-133

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

3-4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

https://scigraph.springernature.com/pub.10.1007/s00239-011-9461-4

0 references

A systematic survey identifies prions and illuminates sequence features of prionogenic proteins

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A kingdom-level phylogeny of eukaryotes based on combined protein data

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Combining Trees as a Way of Combining Data Sets for Phylogenetic Inference, and the Desirability of Combining Gene Trees

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha).

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Prion generation in vitro: amyloid of Ure2p is infectious

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Evolution of monoblepharidalean fungi based on complete mitochondrial genome sequences

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Clann: investigating phylogenetic information through supertree analyses

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

The tree of one percent.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Genome sequence of the recombinant protein production host Pichia pastoris

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Phylogenomics and the reconstruction of the tree of life

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

An efficient algorithm for large-scale detection of protein families

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Genomics of the fungal kingdom: insights into eukaryotic biology

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

The magnitude of fungal diversity: the 1.5 million species estimate revisited

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Molecular evidence for the early colonization of land by fungi and plants

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A phylogenetic overview of the Agaricomycotina

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A higher-level phylogenetic classification of the Fungi

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Deep genomic-scale analyses of the metazoa reject Coelomata: evidence from single- and multigene families analyzed under a supertree and supermatrix paradigm

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Reconstructing the early evolution of Fungi using a six-gene phylogeny

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota)

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Protein-only transmission of three yeast prion strains.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Phylogenomics reveal a robust fungal tree of life

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Protein folding sculpting evolutionary change

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Phylogenomic analyses support the monophyly of Taphrinomycotina, including Schizosaccharomyces fission yeasts

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Performance of four ribosomal DNA regions to infer higher-level phylogenetic relationships of inoperculate euascomycetes (Leotiomyceta).

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

GeneTree: comparing gene and species phylogenies using reconciled trees.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

"Prion-proof" for [PIN+]: infection with in vitro-made amyloid aggregates of Rnq1p-(132-405) induces [PIN+]

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Phylogenomics of eukaryotes: impact of missing data on large alignments

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Supertrees disentangle the chimerical origin of eukaryotic genomes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Novel proteinaceous infectious particles cause scrapie

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A phylogenomic analysis of the Ascomycota

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

A short history of small s: a prion of the fungus Podospora anserina

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Aplysia CPEB can form prion-like multimers in sensory neurons that contribute to long-term facilitation.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

How should species phylogenies be inferred from sequence data?

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

The protistan origins of animals and fungi

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Phylogenetics of Saccharomycetales, the ascomycete yeasts.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Conformational variations in an infectious protein determine prion strain differences

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

[URE3] as an altered URE2 protein: evidence for a prion analog in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Prion amyloid structure explains templating: how proteins can be genes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Alignment uncertainty and genomic analysis

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Lichen-Like Symbiosis 600 Million Years Ago

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

The fungal dimension of biodiversity: magnitude, significance, and conservation

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Evolution of Budding Yeast Prion-determinant Sequences Across Diverse Fungi

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Matrix representation in reconstructing phylogenetic relationships among the eukaryotes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9461-4

21 January 2018

Life with 6000 genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/21938499

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology

1 reference

https://pubmed.ncbi.nlm.nih.gov/21938499

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/21938499

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic analysis of Aspergillus species using DNA sequences from four loci.

1 reference

https://pubmed.ncbi.nlm.nih.gov/21938499

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple sequence alignment--the gateway to further analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21938499

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heads or tails: a simple reliability check for multiple sequence alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/21938499

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary relationships among beta-tubulin gene sequences of basidiomycetous fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/21938499

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Developments in fungal taxonomy.

1 reference

https://pubmed.ncbi.nlm.nih.gov/21938499

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete mitochondrial genome sequence of the yeast Pichia farinosa and comparative analysis of closely related species

1 reference

https://pubmed.ncbi.nlm.nih.gov/21938499

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-011-9461-4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21938499%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q39705218&oldid=2089041124"