Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q39706090)
Watch
English
A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast.
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
title
A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
author
Judith B Zaugg
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
author name string
Nicholas M Luscombe
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
publication date
19 September 2011
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
published in
Genome Research
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
volume
22
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
issue
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
page(s)
84-94
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
cites work
Predicting nucleosome positioning using a duration Hidden Markov Model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Bacterial adaptation through distributed sensing of metabolic fluxes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Nucleosome positioning--what do we really know?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Poly(dA:dT) tracts: major determinants of nucleosome organization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Bidirectional promoters generate pervasive transcription in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
The DNA-encoded nucleosome organization of a eukaryotic genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Single-RNA counting reveals alternative modes of gene expression in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
The transcriptional landscape of the yeast genome defined by RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Two strategies for gene regulation by promoter nucleosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Chromatin decouples promoter threshold from dynamic range
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
GeneTrack--a genomic data processing and visualization framework.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
A high-resolution atlas of nucleosome occupancy in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Phenotypic consequences of promoter-mediated transcriptional noise
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
A genomic code for nucleosome positioning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Noise in gene expression: origins, consequences, and control
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Genome-scale identification of nucleosome positions in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Global nucleosome occupancy in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Transcriptional regulatory code of a eukaryotic genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Collaborative competition mechanism for gene activation in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Transcription reinitiation rate: a potential role for TATA box stabilization of the TFIID:TFIIA:DNA complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Nucleosome loss activates CUP1 and HIS3 promoters to fully induced levels in the yeast Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
Transcription reinitiation rate: a special role for the TATA box.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
14 September 2017
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
25 September 2017
Nucleosome sequence preferences influence in vivo nucleosome organization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
15 June 2018
Nucleosome loss activates yeast downstream promoters in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
15 June 2018
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
20 August 2018
Identification and distinct regulation of yeast TATA box-containing genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
20 August 2018
Evidence for nucleosome depletion at active regulatory regions genome-wide
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246209
retrieved
20 August 2018
A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21930892
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The stability of the TFIIA-TBP-DNA complex is dependent on the sequence of the TATAAA element
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21930892
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1101/GR.124099.111
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
PMC publication ID
3246209
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
PubMed publication ID
21930892
1 reference
stated in
Europe PubMed Central
PMC publication ID
3246209
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930892%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 February 2020
ResearchGate publication ID
51655126
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit