(Q39746910)

14 September 2017

PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments (English)

1 reference

14 September 2017

1 reference

Marlous Hoogstraat

2

0 references

Roeland C H J van Ham

series ordinal

3

object named as

Roeland C H J van Ham

1 reference

14 September 2017

Jose M Muiño

1

1 reference

PMCID

3125775

14 September 2017

Aalt D J van Dijk

series ordinal

4

1 reference

PMCID

3125775

14 September 2017

language of work or name

English

0 references

publication date

24 May 2011

1 reference

14 September 2017

Nucleic Acids Research

1 reference

14 September 2017

39

1 reference

14 September 2017

Web Server issue

1 reference

14 September 2017

W524-7

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

14 September 2017

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

BayesPeak--an R package for analysing ChIP-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Crop genome sequencing: lessons and rationales

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Orchestration of floral initiation by APETALA1.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Impact of genome assembly status on ChIP-Seq and ChIP-PET data mapping

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Computation for ChIP-seq and RNA-seq studies

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

SOAP2: an improved ultrafast tool for short read alignment

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

A large genome center's improvements to the Illumina sequencing system

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

An integrated software system for analyzing ChIP-chip and ChIP-seq data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Tilescope: online analysis pipeline for high-density tiling microarray data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

Bioconductor: open software development for computational biology and bioinformatics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125775

15 June 2018

Identifiers

DOI

10.1093/NAR/GKR373

1 reference

14 September 2017

journals/nar/MuinoHHD11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 September 2017

1 reference

PMCID

3125775