(Q39946027)

15 September 2017

A determining influence for CpG dinucleotides on nucleosome positioning in vitro (English)

1 reference

15 September 2017

Colin S Davey

1

1 reference

15 September 2017

Sari Pennings

2

1 reference

15 September 2017

Carmel Reilly

3

1 reference

15 September 2017

Richard R Meehan

4

1 reference

15 September 2017

James Allan

5

1 reference

15 September 2017

13 August 2004

1 reference

15 September 2017

Nucleic Acids Research

1 reference

15 September 2017

32

1 reference

15 September 2017

14

1 reference

15 September 2017

4322-4331

1 reference

Left-handedly curved DNA regulates accessibility to cis-DNA elements in chromatin

15 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

The structure of DNA in the nucleosome core

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Nucleosome positioning signals in the DNA sequence of the human and mouse H19 imprinting control regions.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Role of DNA sequence in nucleosome stability and dynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Exocyclic groups in the minor groove influence the backbone conformation of DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Intrinsic DNA bends: an organizer of local chromatin structure for transcription

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Impact of CpG methylation on structure, dynamics and solvation of cAMP DNA responsive element

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA) small middle dotpoly(dT) tracts in vivo

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

The exocyclic groups of DNA modulate the affinity and positioning of the histone octamer

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Unique translational positioning of nucleosomes on synthetic DNAs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Flexibility of the B-DNA backbone: effects of local and neighbouring sequences on pyrimidine-purine steps

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Crystal structure of the nucleosome core particle at 2.8 A resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Nucleosome positioning on chicken and human globin gene promoters in vitro. Novel mapping techniques

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Periodicity of strong nucleosome positioning sites around the chicken adult beta-globin gene may encode regularly spaced chromatin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Artificial nucleosome positioning sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Nucleosome positioning: occurrence, mechanisms, and functional consequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Mobile nucleosomes--a general behavior

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

22 September 2017

Nucleosome positioning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Sequence-dependent DNA structure: tetranucleotide conformational maps

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

DNA binding within the nucleosome core

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

DNA bending and its relation to nucleosome positioning.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Sequence periodicities in chicken nucleosome core DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Deletion analysis of a DNA sequence that positions itself precisely on the nucleosome core

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Evidence for kinks in DNA folding in the nucleosome.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Nucleosomal locations of dominant DNA sequence motifs for histone-DNA interactions and nucleosome positioning

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Sequence-dependent DNA structure: a database of octamer structural parameters

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Reb1p-dependent DNA bending effects nucleosome positioning and constitutive transcription at the yeast profilin promoter.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Structural effects of cytosine methylation on DNA sugar pucker studied by FTIR.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514372

Bending and flexibility of methylated and unmethylated EcoRI DNA

20 August 2018

1 reference

12 December 2020

Nucleosome structural features and intrinsic properties of the TATAAACGCC repeat sequence

1 reference

12 December 2020

DNA distortion as a factor in nucleosome positioning

1 reference

12 December 2020

Sequence-dependent DNA structure: dinucleotide conformational maps

1 reference

12 December 2020

The dynamic impact of CpG methylation in DNA

1 reference

12 December 2020

DNA structural variations in the E. coli tyrT promoter

1 reference

12 December 2020

Structure of the nucleosome core particle at 7 Å resolution

1 reference

12 December 2020

Effects of sequence alterations in a DNA segment containing the 5 S RNA gene from Lytechinus variegatus on positioning of a nucleosome core particle in vitro

1 reference

12 December 2020

CpG methylation remodels chromatin structure in vitro

1 reference

12 December 2020

Identification and characterization of genomic nucleosome-positioning sequences

1 reference

12 December 2020

DNA recognition and nucleosome organization

1 reference

12 December 2020

https://api.fatcat.wiki/v0/release/g2ojzwzgdnhtjeulpczbifypg4

Identifiers

1 reference

30 July 2022

release_g2ojzwzgdnhtjeulpczbifypg4

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/g2ojzwzgdnhtjeulpczbifypg4

30 July 2022

https://api.fatcat.wiki/v0/release/g2ojzwzgdnhtjeulpczbifypg4

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/g2ojzwzgdnhtjeulpczbifypg4

PubMed publication ID

1 reference

30 July 2022