(Q40295305)

19 September 2017

hybridSPAdes: an algorithm for hybrid assembly of short and long reads (English)

1 reference

19 September 2017

4

Pavel A Pevzner

1 reference

19 September 2017

Dmitry Antipov

1

1 reference

19 September 2017

Anton Korobeynikov

series ordinal

2

1 reference

19 September 2017

Jeffrey S McLean

series ordinal

3

1 reference

19 September 2017

language of work or name

English

0 references

publication date

20 November 2015

1 reference

19 September 2017

7

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

19 September 2017

32

1 reference

19 September 2017

7

1 reference

19 September 2017

1009-1015

1 reference

Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome

19 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

A complete bacterial genome assembled de novo using only nanopore sequencing data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Assembling short reads from jumping libraries with large insert sizes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Completing bacterial genome assemblies: strategy and performance comparisons

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

PERGA: a paired-end read guided de novo assembler for extending contigs using SVM and look ahead approach

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Recent advances in genomic DNA sequencing of microbial species from single cells

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

ExSPAnder: a universal repeat resolver for DNA fragment assembly

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

The MaSuRCA genome assembler

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

QUAST: quality assessment tool for genome assemblies

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Finished bacterial genomes from shotgun sequence data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Hybrid error correction and de novo assembly of single-molecule sequencing reads

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Single-cell genomic sequencing using Multiple Displacement Amplification

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Multiple sequence alignment using partial order graphs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

An Eulerian path approach to DNA fragment assembly

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

Telescoper: de novo assembly of highly repetitive regions

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4907386

SomaticSniper: identification of somatic point mutations in whole genome sequencing data

20 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV688

Dirichlet mixtures, the Dirichlet process, and the structure of protein space

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV688

SmileFinder: a resampling-based approach to evaluate signatures of selection from genome-wide sets of matching allele frequency data in two or more diploid populations

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV688

10.1093/BIOINFORMATICS/BTV688

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/AntipovKMP16

19 September 2017

1 reference

DBLP Dataset 2021-01-02

release_honckhhjcnfnrardn7fo4eumny

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/honckhhjcnfnrardn7fo4eumny

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

19 September 2017

PubMed publication ID

26589280

1 reference