(Q40303412)

19 September 2017

Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates (English)

1 reference

high-throughput sequencing

19 September 2017

0 references

1 reference

1 reference

based on heuristic

inferred from title

freshwater macroinvertebrate

1 reference

Susanna A Wood

5

0 references

Xavier Pochon

object named as

Xavier Pochon

series ordinal

2

0 references

Eddy J Dowle

series ordinal

1

object named as

Eddy J Dowle

1 reference

19 September 2017

Jonathan C Banks

3

1 reference

PubMed ID

26583904

19 September 2017

Karen Shearer

series ordinal

4

1 reference

19 September 2017

19 November 2015

1 reference

Molecular Ecology Resources

19 September 2017

1 reference

19 September 2017

16

1 reference

19 September 2017

5

1 reference

19 September 2017

1240-1254

1 reference

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

19 September 2017

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Sequencing our way towards understanding global eukaryotic biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Successional change in microbial communities of benthic Phormidium-dominated biofilms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

QIIME allows analysis of high-throughput community sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Biological identifications through DNA barcodes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Terrestrial and aquatic invertebrates as bioindicators for environmental monitoring, with particular reference to mountain ecosystems

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Target enrichment via DNA hybridization capture

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Environmental monitoring. Harnessing DNA to improve environmental management

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Next generation sequencing reveals the hidden diversity of zooplankton assemblages

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Performance comparison of benchtop high-throughput sequencing platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Multiplexed DNA sequence capture of mitochondrial genomes using PCR products

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Targeted enrichment of genomic DNA regions for next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

A universal DNA mini-barcode for biodiversity analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Early detection of eukaryotic communities from marine biofilm using high-throughput sequencing: an assessment of different sampling devices

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Accurate assessment of the impact of salmon farming on benthic sediment enrichment using foraminiferal metabarcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Next-generation sequencing technologies for environmental DNA research

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Metagenomic analyses: past and future trends

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Genetic diversity in widespread species is not congruent with species richness in alpine plant communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Molecular barcoding of aquatic oligochaetes: implications for biomonitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Environmental bio-monitoring with high-throughput sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Molecular genetic tools for environmental monitoring of New Zealand's aquatic habitats, past, present and the future

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Metabarcoding approach for the ballast water surveillance--an advantageous solution or an awkward challenge?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12488

21 January 2018

Identifiers

DOI

10.1111/1755-0998.12488

1 reference

19 September 2017

1 reference

PubMed ID

26583904