(Q40388296)

20 September 2017

Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome (English)

1 reference

20 September 2017

8

1 reference

20 September 2017

16

1 reference

20 September 2017

Veronica van Heyningen

18

1 reference

20 September 2017

Thomas A Hawkins

7

0 references

Alexandra Louis

Alexandra Louis

12

0 references

Sepand Rastegar

Sepand Rastegar

14

0 references

Hugues Roest Crollius

Hugues Roest Crollius

21

0 references

David I. Wilson

David I Wilson

11

0 references

David R. FitzPatrick

David R FitzPatrick

19

0 references

Uwe Strähle

15

Uwe Strähle

1 reference

20 September 2017

17

Laure Bally-Cuif

1 reference

20 September 2017

Magali Naville

1

1 reference

20 September 2017

Minaka Ishibashi

2

1 reference

20 September 2017

Marco Ferg

3

1 reference

20 September 2017

Hemant Bengani

4

1 reference

20 September 2017

Silke Rinkwitz

5

1 reference

20 September 2017

Monika Krecsmarik

6

1 reference

20 September 2017

Elizabeth Manning

9

1 reference

20 September 2017

Chandra S R Chilamakuri

10

1 reference

20 September 2017

F Lucy Raymond

13

1 reference

20 September 2017

Thomas S Becker

20

1 reference

20 September 2017

language of work or name

English

0 references

publication date

24 April 2015

1 reference

20 September 2017

Nature Communications

1 reference

20 September 2017

6

1 reference

20 September 2017

6904

1 reference

Creative Commons Attribution 4.0 International

20 September 2017

start time

24 April 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms7904

0 references

cites work

An atlas of active enhancers across human cell types and tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Recessive mutations in a distal PTF1A enhancer cause isolated pancreatic agenesis.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

CTCF and cohesin: linking gene regulatory elements with their targets

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

DNA-binding specificities of human transcription factors

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

An integrated encyclopedia of DNA elements in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Single-cell mRNA profiling identifies progenitor subclasses in neurospheres.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Regulatory variation in a TBX5 enhancer leads to isolated congenital heart disease.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Genetic and epigenetic determinants of neurogenesis and myogenesis.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

A high-resolution map of human evolutionary constraint using 29 mammals

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Mapping and analysis of chromatin state dynamics in nine human cell types

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Clonal analysis by distinct viral vectors identifies bona fide neural stem cells in the adult zebrafish telencephalon and characterizes their division properties and fate

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

ChIP-Seq identification of weakly conserved heart enhancers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Genomics of long-range regulatory elements

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

X-linked intellectual disability: unique vulnerability of the male genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

MEME SUITE: tools for motif discovery and searching

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

ChIP-seq accurately predicts tissue-specific activity of enhancers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

High-resolution in situ hybridization to whole-mount zebrafish embryos

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Regulation of thalamocortical patterning and synaptic maturation by NeuroD2

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

The Zebrafish Information Network: the zebrafish model organism database

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Long-range control of gene expression: emerging mechanisms and disruption in disease

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Aligning multiple genomic sequences with the threaded blockset aligner

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

The TRANSFAC system on gene expression regulation.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Gene ontology: tool for the unification of biology

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Using zebrafish transgenesis to test human genomic sequences for specific enhancer activity

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Anatomical dissection of zebrafish brain development.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Mapping association between long-range cis-regulatory regions and their target genes using synteny.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

RSAT 2011: regulatory sequence analysis tools.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Heterogeneity in progenitor cell subtypes in the ventricular zone of the zebrafish adult telencephalon

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4423230

Sensitive whole-mount fluorescent in situ hybridization in zebrafish using enhanced tyramide signal amplification

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25908307

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Coordination of PIC Assembly and Chromatin Remodeling During Differentiation-Induced Gene Activation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25908307

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS7904

1 reference

20 September 2017

0 references

1 reference

20 September 2017

PubMed publication ID

25908307

1 reference