(Q40884923)

24 September 2017

Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence (English)

1 reference

24 September 2017

4

1 reference

24 September 2017

Yulia Yuzenkova

2

0 references

author name string

Aleksandra Bochkareva

series ordinal

1

1 reference

24 September 2017

Vasisht R Tadigotla

series ordinal

3

1 reference

24 September 2017

language of work or name

English

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publication date

29 November 2011

1 reference

24 September 2017

1 reference

24 September 2017

31

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24 September 2017

3

1 reference

24 September 2017

630-639

1 reference

describes a project that uses

24 September 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3273390/fullTextXML

inferred from PubMed Central ID database lookup

cites work

A new basal promoter element recognized by RNA polymerase core enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

A unified model of transcription elongation: what have we learned from single-molecule experiments?

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Σ(70)-dependent transcription pausing in Escherichia coli

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Stepwise mechanism for transcription fidelity

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Structural Basis of Transcription: Backtracked RNA Polymerase II at 3.4 Angstrom Resolution

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Transcriptional pausing without backtracking

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Mechanism of sequence-specific pausing of bacterial RNA polymerase

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Single-molecule studies of RNA polymerase: motoring along

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

RNA polymerase -the third class of primases.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Structural basis for substrate loading in bacterial RNA polymerase

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Structural basis for transcription elongation by bacterial RNA polymerase

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Multisubunit RNA polymerases melt only a single DNA base pair downstream of the active site.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

The regulatory roles and mechanism of transcriptional pausing

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Rho-dependent terminators and transcription termination

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Elongation complexes of Thermus thermophilus RNA polymerase that possess distinct translocation conformations

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Transcript-assisted transcriptional proofreading

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Thermodynamic and kinetic modeling of transcriptional pausing

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Bacterial transcription elongation factors: new insights into molecular mechanism of action

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Characterization of a novel RNA polymerase II arrest site which lacks a weak 3' RNA-DNA hybrid

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

A Transcriptional Pause Synchronizes Translation with Transcription in the Tryptophanase Operon Leader Region

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

RfaH, a bacterial transcription antiterminator

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Nucleotide-specific transcriptional pausing in the pyrBI leader region of Escherichia coli K-12.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Rho-independent termination: dyad symmetry in DNA causes RNA polymerase to pause during transcription in vitro

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Attenuation in the control of expression of bacterial operons

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

The Salmonella typhimurium his operon leader region contains an RNA hairpin-dependent transcription pause site. Mechanistic implications of the effect on pausing of altered RNA hairpins

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Detection of transcription-pausing in vivo in the trp operon leader region

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Splicing-dependent RNA polymerase pausing in yeast

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

A backtrack-inducing sequence is an essential component of Escherichia coli σ(70)-dependent promoter-proximal pausing

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Maintenance of RNA-DNA hybrid length in bacterial RNA polymerases.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Region 1.2 of the RNA polymerase sigma subunit controls recognition of the -10 promoter element

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Initial transcribed sequence mutations specifically affect promoter escape properties

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Transcriptional pausing at +62 of the HIV-1 nascent RNA modulates formation of the TAR RNA structure

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Function of E. coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

The sigma 70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Crucial role of the RNA:DNA hybrid in the processivity of transcription

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

RfaH and the ops element, components of a novel system controlling bacterial transcription elongation

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273390

Molecular biology. Self-correcting messages

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FEMBOJ.2011.432

The role of the largest RNA polymerase subunit lid element in preventing the formation of extended RNA-DNA hybrid

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22124324

12 December 2020

inferred from PubMed ID database lookup

The downstream DNA jaw of bacterial RNA polymerase facilitates both transcriptional initiation and pausing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22124324

12 December 2020

inferred from PubMed ID database lookup

Sequence-dependent kinetic model for transcription elongation by RNA polymerase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22124324

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/EMBOJ.2011.432

1 reference

release_itgh2k7nnzgozh4isrwaafe7ii

24 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/itgh2k7nnzgozh4isrwaafe7ii

24 November 2022

mapped directly with Wikidata item

1 reference

24 September 2017

PubMed publication ID

22124324

1 reference