(Q35013133)

5 August 2017

title

Elongation complexes of Thermus thermophilus RNA polymerase that possess distinct translocation conformations (English)

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5 August 2017

Thermus thermophilus

1 reference

Ekaterina Kashkina

1

1 reference

5 August 2017

Michael Anikin

2

1 reference

5 August 2017

Tahir H Tahirov

3

1 reference

5 August 2017

Sergei N Kochetkov

4

1 reference

5 August 2017

Dmitry G Vassylyev

5

1 reference

5 August 2017

Dmitry Temiakov

6

1 reference

5 August 2017

language of work or name

English

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publication date

16 August 2006

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5 August 2017

published in

Nucleic Acids Research

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5 August 2017

volume

34

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5 August 2017

issue

14

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5 August 2017

page(s)

4036-4045

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Regulation through the RNA polymerase secondary channel. Structural and functional variability of the coiled-coil transcription factors

5 August 2017

cites work

1 reference

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Direct observation of base-pair stepping by RNA polymerase

8 July 2018

1 reference

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Structural basis for transcription inhibition by tagetitoxin

8 July 2018

1 reference

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Structural basis of transcription inhibition by antibiotic streptolydigin.

8 July 2018

1 reference

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The involvement of the aspartate triad of the active center in all catalytic activities of multisubunit RNA polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

RNA polymerase II structure: from core to functional complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Structural basis for transcription regulation by alarmone ppGpp.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Active-site dynamics in RNA polymerases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Backtracking by single RNA polymerase molecules observed at near-base-pair resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

The many conformational states of RNA polymerase elongation complexes and their roles in the regulation of transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Structural mechanism for rifampicin inhibition of bacterial rna polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Transcription elongation complex: structure and function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

The specificity loop of T7 RNA polymerase interacts first with the promoter and then with the elongating transcript, suggesting a mechanism for promoter clearance

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

A structural model of transcription elongation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Overextended RNA:DNA hybrid as a negative regulator of RNA polymerase II processivity.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Structure of a transcribing T7 RNA polymerase initiation complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Functional topography of nascent RNA in elongation intermediates of RNA polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

A model for the mechanism of polymerase translocation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Protein-RNA interactions in the active center of transcription elongation complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Variation in the size of nascent RNA cleavage products as a function of transcript length and elongation competence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Mechanics of myosin motor: force and step size

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

The structural mechanism of translocation and helicase activity in T7 RNA polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Structural basis for substrate selection by t7 RNA polymerase.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Methods of walking with the RNA polymerase

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Crystallization and preliminary crystallographic analysis of T7 RNA polymerase elongation complex.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Mechanistic model of the elongation complex of Escherichia coli RNA polymerase

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Crucial role of the RNA:DNA hybrid in the processivity of transcription

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Histidine-tagged RNA polymerase: dissection of the transcription cycle using immobilized enzyme.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

A Ratchet Mechanism of Transcription Elongation and Its Control

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme fromThermus thermophilus

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557819

Transcript cleavage by Thermus thermophilus RNA polymerase. Effects of GreA and anti-GreA factors

9 December 2018

1 reference

12 December 2020

Characterization of T7 RNA polymerase transcription complexes assembled on nucleic acid scaffolds

1 reference

12 December 2020

Role of the Non-template Strand of the Elongation Bubble in Intrinsic Transcription Termination

1 reference

12 December 2020

Biochemical assays of Gre factors of Thermus thermophilus

1 reference

12 December 2020

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

1 reference

12 December 2020

Processing of X-ray diffraction data collected in oscillation mode

1 reference

12 December 2020

SII-facilitated transcript cleavage in RNA polymerase II complexes stalled early after initiation occurs in primarily dinucleotide increments

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL559

1 reference

5 August 2017

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5 August 2017

1 reference