(Q41203371)

28 September 2017

Direct observation of cotranscriptional folding in an adenine riboswitch (English)

1 reference

28 September 2017

2

Steven M Block

1 reference

28 September 2017

Kirsten L Frieda

1

1 reference

PMC publication ID

3496414

28 September 2017

language of work or name

English

0 references

publication date

1 October 2012

1 reference

28 September 2017

1 reference

28 September 2017

338

1 reference

28 September 2017

6105

1 reference

28 September 2017

397-400

1 reference

Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Comparative study between transcriptionally- and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

mRNA secondary structures fold sequentially but exchange rapidly in vivo

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

A pH-responsive riboregulator

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

The structural and functional diversity of metabolite-binding riboswitches

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Riboswitch RNAs: using RNA to sense cellular metabolism

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Direct observation of hierarchical folding in single riboswitch aptamers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Folding of the adenine riboswitch

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

RNA folding during transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Thinking quantitatively about transcriptional regulation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Adenine riboswitches and gene activation by disruption of a transcription terminator

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

28 September 2017

Bacterial RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Folding of a large ribozyme during transcription and the effect of the elongation factor NusA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Functional topography of nascent RNA in elongation intermediates of RNA polymerase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Applied force reveals mechanistic and energetic details of transcription termination

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Encoding folding paths of RNA switches

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Pulling on the nascent RNA during transcription does not alter kinetics of elongation or ubiquitous pausing

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

RNA folding during transcription by Escherichia coli RNA polymerase analyzed by RNA self-cleavage

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

The kinetics of ligand binding by an adenine-sensing riboswitch

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Effect of transcription on folding of the Tetrahymena ribozyme

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496414

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

19 August 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1225722

Direct observation of base-pair stepping by RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1225722

Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1225722

Stretching DNA with optical tweezers

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1225722

The purine efflux pump PbuE in Bacillus subtilis modulates expression of the PurR and G-box (XptR) regulons by adjusting the purine base pool size

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1225722

E. coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1225722

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1225722

Pathway modulation, circular permutation and rapid RNA folding under kinetic control

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23087247

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.1225722

1 reference

28 September 2017

1 reference

PMC publication ID

3496414

28 September 2017

PubMed publication ID

23087247

1 reference

PMC publication ID

3496414