(Q41378077)

30 September 2017

title

Genome-guided investigation of plant natural product biosynthesis (English)

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30 September 2017

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3

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Burkhard Steuernagel

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Kevin L. Childs

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Kevin L Childs

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John P Hamilton

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John P Hamilton

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Sarah E. O'Connor

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Sarah E O'Connor

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author name string

Franziska Kellner

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30 September 2017

Jeongwoon Kim

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Brieanne Vaillancourt

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Jason Cepela

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Marc Habermann

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Leah Clissold

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Kirsten McLay

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Carol Robin Buell

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30 September 2017

publication date

11 April 2015

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30 September 2017

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30 September 2017

volume

82

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30 September 2017

issue

4

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30 September 2017

page(s)

680-692

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Basic local alignment search tool

30 September 2017

cites work

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Together we stand: genes cluster to coordinate regulation.

21 January 2018

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A 7-deoxyloganetic acid glucosyltransferase contributes a key step in secologanin biosynthesis in Madagascar periwinkle

21 January 2018

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A pair of tabersonine 16-hydroxylases initiates the synthesis of vindoline in an organ-dependent manner in Catharanthus roseus

21 January 2018

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Analysis of the bread wheat genome using whole-genome shotgun sequencing

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MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations

21 January 2018

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Genomic signatures of specialized metabolism in plants

21 January 2018

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In-depth proteome mining of cultured Catharanthus roseus cells identifies candidate proteins involved in the synthesis and transport of secondary metabolites

21 January 2018

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The variant call format and VCFtools

21 January 2018

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

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Molecular cloning, expression, and induction of berberine bridge enzyme, an enzyme essential to the formation of benzophenanthridine alkaloids in the response of plants to pathogenic attack

21 January 2018

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Accelerated Profile HMM Searches

21 January 2018

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Metabolic diversification--independent assembly of operon-like gene clusters in different plants.

21 January 2018

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Pfam: the protein families database

21 January 2018

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ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism

21 January 2018

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Analysis of a chemical plant defense mechanism in grasses

21 January 2018

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An alternative route to cyclic terpenes by reductive cyclization in iridoid biosynthesis

21 January 2018

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A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus

21 January 2018

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Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species

21 January 2018

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Cytogenetic characterization and genome size of the medicinal plant Catharanthus roseus (L.) G. Don.

21 January 2018

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The evolution of function in strictosidine synthase-like proteins

21 January 2018

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Tapping the promise of genomics in species with complex, nonmodel genomes

21 January 2018

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MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

21 January 2018

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The interaction of microsomal cytochrome P450 2B4 with its redox partners, cytochrome P450 reductase and cytochrome b(5).

21 January 2018

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Indole alkaloid biosynthesis in Catharanthus roseus: new enzyme activities and identification of cytochrome P450 CYP72A1 as secologanin synthase

21 January 2018

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Biosynthesis of antinutritional alkaloids in solanaceous crops is mediated by clustered genes

21 January 2018

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Repbase Update, a database of eukaryotic repetitive elements

21 January 2018

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Gene finding in novel genomes

21 January 2018

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A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat

21 January 2018

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The Complete Plastid Genome Sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid Genome Evolution, Molecular Marker Identification, and Phylogenetic Implications in Asterids

21 January 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

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The Sequence Alignment/Map format and SAMtools

21 January 2018

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Identification of a low vindoline accumulating cultivar of Catharanthus roseus (L.) G. Don by alkaloid and enzymatic profiling.

21 January 2018

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Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

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Evolution of a complex locus for terpene biosynthesis in solanum

21 January 2018

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Directed biosynthesis of alkaloid analogs in the medicinal plant Catharanthus roseus

21 January 2018

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Nucleotide sequence of a cDNA encoding the vacuolar protein strictosidine synthase from Catharanthus roseus

21 January 2018

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A novel jasmonate- and elicitor-responsive element in the periwinkle secondary metabolite biosynthetic gene Str interacts with a jasmonate- and elicitor-inducible AP2-domain transcription factor, ORCA2.

21 January 2018

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Vacuolar transport of nicotine is mediated by a multidrug and toxic compound extrusion (MATE) transporter in Nicotiana tabacum

21 January 2018

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Modularity of plant metabolic gene clusters: a trio of linked genes that are collectively required for acylation of triterpenes in oat.

21 January 2018

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Iridoid synthase activity is common among the plant progesterone 5β-reductase family

21 January 2018

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The leaf epidermome of Catharanthus roseus reveals its biochemical specialization

21 January 2018

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Gene clustering in plant specialized metabolism.

21 January 2018

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Chemistry and biology of monoterpene indole alkaloid biosynthesis

21 January 2018

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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

21 January 2018

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A gene cluster for secondary metabolism in oat: implications for the evolution of metabolic diversity in plants.

21 January 2018

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The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

21 January 2018

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 January 2018

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Ab initio gene finding in Drosophila genomic DNA

21 January 2018

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 January 2018

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

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ABySS: a parallel assembler for short read sequence data

21 January 2018

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Gene prediction with a hidden Markov model and a new intron submodel

21 January 2018

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Unlocking the diversity of alkaloids in Catharanthus roseus: nuclear localization suggests metabolic channeling in secondary metabolism

21 January 2018

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CYP76M7 is an ent-cassadiene C11alpha-hydroxylase defining a second multifunctional diterpenoid biosynthetic gene cluster in rice

21 January 2018

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Why biosynthetic genes for chemical defense compounds cluster.

21 January 2018

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MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

21 January 2018

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Genome sequencing and analysis of the model grass Brachypodium distachyon

21 January 2018

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Genome sequence and analysis of the tuber crop potato

21 January 2018

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The tomato genome sequence provides insights into fleshy fruit evolution

21 January 2018

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TopHat: discovering splice junctions with RNA-Seq

21 January 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

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CathaCyc, a metabolic pathway database built from Catharanthus roseus RNA-Seq data

21 January 2018

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Jasmonate modulates development- and light-regulated alkaloid biosynthesis in Catharanthus roseus.

21 January 2018

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Transcriptome analysis of Catharanthus roseus for gene discovery and expression profiling

21 January 2018

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A Papaver somniferum 10-gene cluster for synthesis of the anticancer alkaloid noscapine

21 January 2018

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

21 January 2018

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A greedy algorithm for aligning DNA sequences

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/TPJ.12827

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30 September 2017

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