(Q41514407)

English

Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate

scientific article published on May 2010

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate (English)

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

Escherichia coli

1 reference

based on heuristic

inferred from title

author name string

Wayne S Kontur

1

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

Michael W Capp

2

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

Theodore J Gries

3

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

Ruth M Saecker

4

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

M Thomas Record

5

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

language of work or name

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publication date

1 May 2010

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Europe PubMed Central

PMC publication ID

2 October 2017

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

49

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

20

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

4361-4373

1 reference

Europe PubMed Central

PMC publication ID

2 October 2017

Why Hofmeister effects of many salts favor protein folding but not DNA helix formation.

1 reference

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T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site

1 reference

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1 reference

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Molecular evolution of multisubunit RNA polymerases: structural analysis

1 reference

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1 reference

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DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 degrees C and results in the accumulation of an off-pathway intermediate.

1 reference

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Evidence for a tyrosine-adenine stacking interaction and for a short-lived open intermediate subsequent to initial binding of Escherichia coli RNA polymerase to promoter DNA

1 reference

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A full-length group 1 bacterial sigma factor adopts a compact structure incompatible with DNA binding

1 reference

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General stress response signalling: unwrapping transcription complexes by DNA relaxation via the sigma38 C-terminal domain

1 reference

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Thermodynamic origin of hofmeister ion effects

1 reference

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Formation of a wrapped DNA-protein interface: experimental characterization and analysis of the large contributions of ions and water to the thermodynamics of binding IHF to H' DNA.

1 reference

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Poising of Escherichia coli RNA polymerase and its release from the sigma 38 C-terminal tail for osmY transcription

1 reference

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Late steps in the formation of E. coli RNA polymerase-lambda P R promoter open complexes: characterization of conformational changes by rapid [perturbant] upshift experiments

1 reference

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Threonine 429 of Escherichia coli sigma 70 is a key participant in promoter DNA melting by RNA polymerase

1 reference

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Structural basis for transcription elongation by bacterial RNA polymerase

1 reference

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Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase

1 reference

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Solute probes of conformational changes in open complex (RPo) formation by Escherichia coli RNA polymerase at the lambdaPR promoter: evidence for unmasking of the active site in the isomerization step and for large-scale coupled folding in the subse

1 reference

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6 June 2018

Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter

1 reference

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6 June 2018

The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase

1 reference

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Bacterial RNA polymerases: the wholo story

1 reference

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A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli

1 reference

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6 June 2018

Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarrays

1 reference

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6 June 2018

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

1 reference

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Protein surface salt bridges and paths for DNA wrapping

1 reference

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6 June 2018

Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

1 reference

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Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

1 reference

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6 June 2018

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

1 reference

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Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

1 reference

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Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex

1 reference

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Biophysical characterization of changes in amounts and activity of Escherichia coli cell and compartment water and turgor pressure in response to osmotic stress

1 reference

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Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70.

1 reference

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Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners

1 reference

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1 reference

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General method of analysis of kinetic equations for multistep reversible mechanisms in the single-exponential regime: application to kinetics of open complex formation between Esigma70 RNA polymerase and lambdaP(R) promoter DNA.

1 reference

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6 June 2018

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1 reference

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1 reference

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HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Osmolyte-induced transcription: -35 region elements and recognition by sigma38 (rpoS).

1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/20201585

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/20201585

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of Solution Conditions on the Steady-State Kinetics of Initiation of Transcription by T7 RNA Polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/20201585

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI100092A

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Europe PubMed Central

PMC publication ID

2 October 2017

release_xkzbffx6ebcuxgdhle4jitweoi

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https://api.fatcat.wiki/v0/release/xkzbffx6ebcuxgdhle4jitweoi

24 November 2022

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mapped directly with Wikidata item

PMC publication ID

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Europe PubMed Central

PMC publication ID

2 October 2017

PubMed publication ID

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Europe PubMed Central

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2 October 2017

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