(Q41554466)

3 October 2017

IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels (English)

1 reference

3 October 2017

Yu Peng

1

1 reference

3 October 2017

Henry C M Leung

2

1 reference

3 October 2017

Siu-Ming Yiu

3

1 reference

3 October 2017

Ming-Ju Lv

4

1 reference

3 October 2017

Xin-Guang Zhu

5

1 reference

3 October 2017

Francis Y L Chin

6

1 reference

3 October 2017

language of work or name

English

0 references

publication date

1 July 2013

1 reference

3 October 2017

1 reference

3 October 2017

29

1 reference

3 October 2017

13

1 reference

3 October 2017

i326-34

1 reference

Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads

3 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

Full-length transcriptome assembly from RNA-Seq data without a reference genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

De novo assembly and analysis of RNA-seq data.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

Optimization of de novo transcriptome assembly from next-generation sequencing data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

The sequence and de novo assembly of the giant panda genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

TopHat: discovering splice junctions with RNA-Seq

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

ABySS: a parallel assembler for short read sequence data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

Statistical inferences for isoform expression in RNA-Seq

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

The transcriptional landscape of the yeast genome defined by RNA sequencing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

BLAT—The BLAST-Like Alignment Tool

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

Molecular biology: power sequencing.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694675

10.1093/BIOINFORMATICS/BTT219

19 August 2018

Identifiers

DOI

1 reference

journals/bioinformatics/PengLYLZC13

3 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

3 October 2017

PubMed publication ID

23813001

1 reference