(Q41554950)

3 October 2017

Updating RNA-Seq analyses after re-annotation (English)

1 reference

3 October 2017

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1 reference

3

Lior Pachter

1 reference

3 October 2017

Adam Roberts

1

1 reference

3 October 2017

Lorian Schaeffer

series ordinal

2

1 reference

3 October 2017

language of work or name

English

0 references

publication date

14 May 2013

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3 October 2017

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3 October 2017

29

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3 October 2017

13

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3 October 2017

1631-1637

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Reuse of public genome-wide gene expression data

3 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

Differential analysis of gene regulation at transcript resolution with RNA-seq

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

Streaming fragment assignment for real-time analysis of sequencing experiments

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

Dissect: detection and characterization of novel structural alterations in transcribed sequences

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

Fast gapped-read alignment with Bowtie 2

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

The real cost of sequencing: higher than you think!

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

The developmental transcriptome of Drosophila melanogaster

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

The Sequence Alignment/Map format and SAMtools

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

The past, present and future of genome-wide re-annotation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

Detection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694665

10.1093/BIOINFORMATICS/BTT197

19 August 2018

Identifiers

DOI

1 reference

journals/bioinformatics/RobertsSP13

3 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

3 October 2017

PubMed publication ID

23677943

1 reference