(Q41583967)

4 October 2017

Properties of cell death models calibrated and compared using Bayesian approaches (English)

1 reference

4 October 2017

1 reference

6

Peter K Sorger

1 reference

4 October 2017

3

Jeremy L Muhlich

1 reference

4 October 2017

Hoda Eydgahi

1

1 reference

4 October 2017

William W Chen

series ordinal

2

1 reference

4 October 2017

Dennis Vitkup

series ordinal

4

1 reference

4 October 2017

John N Tsitsiklis

series ordinal

5

1 reference

4 October 2017

1 January 2013

1 reference

Molecular Systems Biology

4 October 2017

1 reference

4 October 2017

9

1 reference

4 October 2017

644

1 reference

Exploring the contextual sensitivity of factors that determine cell-to-cell variability in receptor-mediated apoptosis

4 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Lyapunov exponents and phase diagrams reveal multi-factorial control over TRAIL-induced apoptosis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Rapid phospho-turnover by receptor tyrosine kinases impacts downstream signaling and drug binding

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Separating intrinsic from extrinsic fluctuations in dynamic biological systems

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Measuring and modeling apoptosis in single cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Bistability in apoptosis by receptor clustering

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Classic and contemporary approaches to modeling biochemical reactions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Still embedded together binding to membranes regulates Bcl-2 protein interactions.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

New insights into apoptosis signaling by Apo2L/TRAIL.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Parameter estimation and model selection in computational biology

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Dynamics within the CD95 death-inducing signaling complex decide life and death of cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

6 June 2018

The BCL-2 family reunion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Optimal experimental design for parameter estimation of a cell signaling model

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

An empirical Bayesian approach for model-based inference of cellular signaling networks

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Understanding apoptosis by systems biology approaches

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Membrane binding by tBid initiates an ordered series of events culminating in membrane permeabilization by Bax

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Modeling a snap-action, variable-delay switch controlling extrinsic cell death

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Integrating computational and biochemical studies to explore mechanisms in NF-{kappa}B signaling

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

A dual receptor crosstalk model of G-protein-coupled signal transduction

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Sloppiness, robustness, and evolvability in systems biology

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Quantitative analysis of pathways controlling extrinsic apoptosis in single cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Robustness analysis identifies the plausible model of the Bcl-2 apoptotic switch

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Universally sloppy parameter sensitivities in systems biology models

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Modeling of the role of a Bax-activation switch in the mitochondrial apoptosis decision

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Physicochemical modelling of cell signalling pathways.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Systems analysis of effector caspase activation and its control by X-linked inhibitor of apoptosis protein

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeability transition pores

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Effects of Bcl-2 levels on Fas signaling-induced caspase-3 activation: molecular genetic tests of computational model predictions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Topology and robustness in the Drosophila segment polarity network

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Statistical mechanical approaches to models with many poorly known parameters

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Real-time single cell analysis of Smac/DIABLO release during apoptosis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Modelling of simple and complex calcium oscillations. From single-cell responses to intercellular signalling.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Induction of apoptosis by cancer chemotherapy.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Caspases: the executioners of apoptosis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Kinetics of protein-protein association explained by Brownian dynamics computer simulation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Dynamics of outer mitochondrial membrane permeabilization during apoptosis.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Linking data to models: data regression

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Computing Bayes factors using thermodynamic integration.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Global dynamic optimization for parameter estimation in chemical kinetics.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Bayesian ensemble approach to error estimation of interatomic potentials.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

The structural identifiability and parameter estimation of a multispecies model for the transmission of mastitis in dairy cows with postmilking teat disinfection.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

Multi-parameter analysis of the kinetics of NF-kappaB signalling and transcription in single living cells.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

A Bayesian approach to stochastic cost-effectiveness analysis. An illustration and application to blood pressure control in type 2 diabetes.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

A mathematical model of caspase function in apoptosis.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588908

A new look at the statistical model identification

19 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

Inference from Iterative Simulation Using Multiple Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

Estimating the Dimension of a Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

Exact stochastic simulation of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

Quantification of Short Term Signaling by the Epidermal Growth Factor Receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

The statistical mechanics of complex signaling networks: nerve growth factor signaling

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23385484

12 December 2020

inferred from PubMed ID database lookup

10.1007/978-1-4899-4485-6

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

7 January 2021

inferred from DOI database lookup

An Adaptive Metropolis Algorithm

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

7 January 2021

inferred from DOI database lookup

Out of India, thrice: diversification of Asian forest scorpions reveals three colonizations of Southeast Asia

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2012.69

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/MSB.2012.69

1 reference

4 October 2017

1 reference

4 October 2017

PubMed publication ID

23385484

1 reference