(Q41627669)

English

The decapping activator Edc3 and the Q/N-rich domain of Lsm4 function together to enhance mRNA stability and alter mRNA decay pathway dependence in Saccharomyces cerevisiae.

scientific article published on 19 August 2016

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scholarly article

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21 March 2020

The decapping activator Edc3 and the Q/N-rich domain of Lsm4 function together to enhance mRNA stability and alter mRNA decay pathway dependence in Saccharomyces cerevisiae (English)

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21 March 2020

Saccharomyces cerevisiae

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based on heuristic

inferred from title

Susanne Brettschneider

1

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21 March 2020

Vidya Balagopal

5

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21 March 2020

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21 March 2020

author name string

Maren Müller

2

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21 March 2020

Mridula Muppavarapu

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21 March 2020

Jessie Gommlich

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21 March 2020

publication date

15 October 2016

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21 March 2020

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21 March 2020

5

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21 March 2020

10

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21 March 2020

1388-1399

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21 March 2020

copyright license

Creative Commons Attribution 3.0 Unported

3 September 2020

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April 2022 Public Data File from Crossref

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Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

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Membrane-association of mRNA decapping factors is independent of stress in budding yeast

1 reference

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6 October 2017

Control of mRNA decapping by positive and negative regulatory elements in the Dcp2 C-terminal domain

1 reference

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1 reference

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1 reference

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Quantifying mRNA targeting to P-bodies in living human cells reveals their dual role in mRNA decay and storage

1 reference

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Pat1 contributes to the RNA binding activity of the Lsm1-7-Pat1 complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Interrelations between translation and general mRNA degradation in yeast.

1 reference

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Cytoplasmic 5'-3' exonuclease Xrn1p is also a genome-wide transcription factor in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

mRNA localization to P-bodies in yeast is bi-phasic with many mRNAs captured in a late Bfr1p-dependent wave

1 reference

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Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability

1 reference

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6 October 2017

The discovery and analysis of P Bodies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Processing body and stress granule assembly occur by independent and differentially regulated pathways in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

RNA degradation in Saccharomyces cerevisae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Sequestration of highly expressed mRNAs in cytoplasmic granules, P-bodies, and stress granules enhances cell viability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Genome-wide studies of mRNA synthesis and degradation in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Reconsidering movement of eukaryotic mRNAs between polysomes and P bodies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

The structural basis of Edc3- and Scd6-mediated activation of the Dcp1:Dcp2 mRNA decapping complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Dcp1 links coactivators of mRNA decapping to Dcp2 by proline recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

A split active site couples cap recognition by Dcp2 to activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Identification and analysis of the interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Co-translational mRNA decay in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Robust heat shock induces eIF2alpha-phosphorylation-independent assembly of stress granules containing eIF3 and 40S ribosomal subunits in budding yeast, Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Lsm1-7-Pat1 complex: a link between 3' and 5'-ends in mRNA decay?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

A role for Q/N-rich aggregation-prone regions in P-body localization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

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Stress-dependent relocalization of translationally primed mRNPs to cytoplasmic granules that are kinetically and spatially distinct from P-bodies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Accumulation of polyadenylated mRNA, Pab1p, eIF4E, and eIF4G with P-bodies in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

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Analysis of P-body assembly in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

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P bodies and the control of mRNA translation and degradation

1 reference

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YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA.

1 reference

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ARE-mRNA degradation requires the 5'-3' decay pathway.

1 reference

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General translational repression by activators of mRNA decapping

1 reference

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6 October 2017

Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Processing bodies require RNA for assembly and contain nontranslating mRNAs

1 reference

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6 October 2017

Nuclear pre-mRNA decapping and 5' degradation in yeast require the Lsm2-8p complex.

1 reference

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6 October 2017

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1 reference

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6 October 2017

Targeted mRNA degradation by deadenylation-independent decapping.

1 reference

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6 October 2017

Cytoplasmic foci are sites of mRNA decay in human cells

1 reference

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6 October 2017

Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Crystal structure of Dcp1p and its functional implications in mRNA decapping

1 reference

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6 October 2017

Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies

1 reference

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Exosome-mediated recognition and degradation of mRNAs lacking a termination codon

1 reference

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1 reference

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6 October 2017

Poly(A)-binding proteins regulate both mRNA deadenylation and decapping in yeast cytoplasmic extracts

1 reference

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1 reference

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6 October 2017

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Genomic expression programs in the response of yeast cells to environmental changes

1 reference

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6 October 2017

Identification of a regulated pathway for nuclear pre-mRNA turnover.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Yeast Sm-like proteins function in mRNA decapping and decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

An essential component of the decapping enzyme required for normal rates of mRNA turnover

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 October 2017

Turnover mechanisms of the stable yeast PGK1 mRNA

1 reference

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6 October 2017

Codon optimality is a major determinant of mRNA stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 June 2018

Granules harboring translationally active mRNAs provide a platform for P-body formation following stress.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 June 2018

Promoter sequences direct cytoplasmic localization and translation of mRNAs during starvation in yeast

1 reference

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6 June 2018

P-body formation is a consequence, not the cause, of RNA-mediated gene silencing

1 reference

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6 June 2018

Isolation and characterization of Dcp1p, the yeast mRNA decapping enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

6 June 2018

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

19 August 2018

The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

19 August 2018

Computational modeling and experimental analysis of nonsense-mediated decay in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

19 August 2018

Defects in the mRNA export factors Rat7p, Gle1p, Mex67p, and Rat8p cause hyperadenylation during 3'-end formation of nascent transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087693

19 August 2018

Determining in vivo activity of the yeast cytoplasmic exosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/27543059

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1242/BIO.020487

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27543059%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

Europe PubMed Central

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21 March 2020

1 reference

Europe PubMed Central

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21 March 2020

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