(Q41819717)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904090%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

title

Genome-wide identification of genes directly regulated by the pleiotropic transcription factor Spx in Bacillus subtilis (English)

1 reference

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11 February 2020

0 references

1 reference

1

1 reference

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11 February 2020

Libor Krasny

9

1 reference

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11 February 2020

author name string

Pierre Nicolas

2

1 reference

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11 February 2020

Olivier Delumeau

3

1 reference

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11 February 2020

Alžbeta Rabatinová

4

1 reference

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11 February 2020

Jana Korelusová

5

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11 February 2020

Aurélie Leduc

6

1 reference

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11 February 2020

Philippe Bessières

7

1 reference

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11 February 2020

Etienne Dervyn

8

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11 February 2020

Philippe Noirot

10

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11 February 2020

publication date

16 August 2012

1 reference

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11 February 2020

published in

Nucleic Acids Research

1 reference

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11 February 2020

volume

40

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11 February 2020

issue

19

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11 February 2020

page(s)

9571-9583

1 reference

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Creative Commons Attribution-NonCommercial 3.0 Unported

11 February 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Phenotype enhancement screen of a regulatory spx mutant unveils a role for the ytpQ gene in the control of iron homeostasis

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S-bacillithiolation protects against hypochlorite stress in Bacillus subtilis as revealed by transcriptomics and redox proteomics

6 June 2018

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Rapid changes in gene expression: DNA determinants of promoter regulation by the concentration of the transcription initiating NTP in Bacillus subtilis.

6 June 2018

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Role of spx in biofilm formation of Staphylococcus epidermidis

6 June 2018

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Biosynthesis and functions of bacillithiol, a major low-molecular-weight thiol in Bacilli

6 June 2018

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Two Spx proteins modulate stress tolerance, survival, and virulence in Streptococcus mutans

6 June 2018

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Promoter Recognition by a Complex of Spx and the C-Terminal Domain of the RNA Polymerase α Subunit

6 June 2018

1 reference

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The transcriptionally active regions in the genome of Bacillus subtilis

6 June 2018

1 reference

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Transcriptional landscape estimation from tiling array data using a model of signal shift and drift

6 June 2018

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6 June 2018

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From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

6 June 2018

1 reference

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The YjbH protein of Bacillus subtilis enhances ClpXP-catalyzed proteolysis of Spx

6 June 2018

1 reference

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Activation of transcription initiation by Spx: formation of transcription complex and identification of a Cis-acting element required for transcriptional activation

6 June 2018

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Proteomic signatures uncover thiol-specific electrophile resistance mechanisms in Bacillus subtilis

6 June 2018

1 reference

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Regulation of quinone detoxification by the thiol stress sensing DUF24/MarR-like repressor, YodB in Bacillus subtilis

6 June 2018

1 reference

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Requirement of the zinc-binding domain of ClpX for Spx proteolysis in Bacillus subtilis and effects of disulfide stress on ClpXP activity

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

The MarR-type repressor MhqR (YkvE) regulates multiple dioxygenases/glyoxalases and an azoreductase which confer resistance to 2-methylhydroquinone and catechol in Bacillus subtilis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Dual negative control of spx transcription initiation from the P3 promoter by repressors PerR and YodB in Bacillus subtilis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

The global regulator Spx functions in the control of organosulfur metabolism in Bacillus subtilis

6 June 2018

1 reference

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Proteome signatures for stress and starvation in Bacillus subtilis as revealed by a 2-D gel image color coding approach.

6 June 2018

1 reference

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Spx is a global effector impacting stress tolerance and biofilm formation in Staphylococcus aureus

6 June 2018

1 reference

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Mutational analysis of the Bacillus subtilis RNA polymerase alpha C-terminal domain supports the interference model of Spx-dependent repression

6 June 2018

1 reference

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Global control of cysteine metabolism by CymR in Bacillus subtilis

6 June 2018

1 reference

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Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

6 June 2018

1 reference

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Tricksy business: transcriptome analysis reveals the involvement of thioredoxin A in redox homeostasis, oxidative stress, sulfur metabolism, and cellular differentiation in Bacillus subtilis

6 June 2018

1 reference

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Three different systems participate in L-cystine uptake in Bacillus subtilis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Spx-dependent global transcriptional control is induced by thiol-specific oxidative stress in Bacillus subtilis

6 June 2018

1 reference

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A regulatory protein that interferes with activator-stimulated transcription in bacteria

6 June 2018

1 reference

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Global characterization of disulfide stress in Bacillus subtilis.

6 June 2018

1 reference

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

6 June 2018

1 reference

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SubtiList: the reference database for the Bacillus subtilis genome

6 June 2018

1 reference

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Phosphate starvation-inducible proteins of Bacillus subtilis: proteomics and transcriptional analysis.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

The clp proteases of Bacillus subtilis are directly involved in degradation of misfolded proteins

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Effects of metabolic flux on stress response pathways in Lactococcus lactis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Thioredoxin is an essential protein induced by multiple stresses in Bacillus subtilis.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Stress induction of clpC in Bacillus subtilis and its involvement in stress tolerance

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

A promoter melting region in the primary sigma factor of Bacillus subtilis. Identification of functionally important aromatic amino acids

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Compilation and analysis of Bacillus subtilis sigma A-dependent promoter sequences: evidence for extended contact between RNA polymerase and upstream promoter DNA.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Analysis of gene control signals by DNA fusion and cloning in Escherichia coli

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Overproduction, purification, and characterization of Bacillus subtilis RNA polymerase sigma A factor

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

The dynamic protein partnership of RNA polymerase in Bacillus subtilis.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

CtsR inactivation during thiol-specific stress in low GC, Gram+ bacteria.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

SpxA1, a novel transcriptional regulator involved in X-state (competence) development in Streptococcus pneumoniae.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Genome-wide responses to carbonyl electrophiles in Bacillus subtilis: control of the thiol-dependent formaldehyde dehydrogenase AdhA and cysteine proteinase YraA by the MerR-family regulator YraB (AdhR).

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

The Spx paralogue MgsR (YqgZ) controls a subregulon within the general stress response of Bacillus subtilis.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

The role of thioredoxin TrxA in Bacillus subtilis: a proteomics and transcriptomics approach

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

HxlR, a member of the DUF24 protein family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Redox-sensitive transcriptional control by a thiol/disulphide switch in the global regulator, Spx.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

Sequential Peptide Affinity (SPA) system for the identification of mammalian and bacterial protein complexes.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

PhoP-P and RNA polymerase sigmaA holoenzyme are sufficient for transcription of Pho regulon promoters in Bacillus subtilis: PhoP-P activator sites within the coding region stimulate transcription in vitro

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3479203

YjbH is a novel negative effector of the disulphide stress regulator, Spx, in Bacillus subtilis

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22904090

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS755

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904090%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904090%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

22904090

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22904090%20AND%20SRC:MED&resulttype=core&format=json