(Q41847944)

13 October 2017

FDRAnalysis: a tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines (English)

1 reference

13 October 2017

1

1 reference

13 October 2017

6

1 reference

13 October 2017

Andrew R Jones

5

0 references

author name string

Ritesh Krishna

series ordinal

2

1 reference

13 October 2017

Paul Blackhurst

series ordinal

3

1 reference

13 October 2017

Jennifer A Siepen

series ordinal

4

1 reference

13 October 2017

21 February 2011

1 reference

Journal of Proteome Research

13 October 2017

1 reference

13 October 2017

10

1 reference

13 October 2017

4

1 reference

13 October 2017

2088-2094

1 reference

Comparison of novel decoy database designs for optimizing protein identification searches using ABRF sPRG2006 standard MS/MS data sets

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

False discovery rates and related statistical concepts in mass spectrometry-based proteomics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Posterior error probabilities and false discovery rates: two sides of the same coin

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Characterization of mouse spleen cells by subtractive proteomics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Open mass spectrometry search algorithm

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Probability-based protein identification by searching sequence databases using mass spectrometry data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Qscore: an algorithm for evaluating SEQUEST database search results

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

Positional proteomics: preparation of amino-terminal peptides as a strategy for proteome simplification and characterization

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707089

2 December 2018

Identifiers

DOI

10.1021/PR101157S

1 reference

13 October 2017

1 reference

13 October 2017

PubMed publication ID

21222473

1 reference