(Q41868711)

English

Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.

scientific article published on 27 November 2012

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scholarly article

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18 February 2020

Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing (English)

1 reference

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18 February 2020

2

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18 February 2020

Gaetano I Dellino

1

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18 February 2020

4

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18 February 2020

9

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18 February 2020

author name string

Rossana Piccioni

3

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18 February 2020

Stefania Banfi

5

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18 February 2020

Simona Segalla

6

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18 February 2020

Matteo Cesaroni

7

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18 February 2020

Ramiro Mendoza-Maldonado

8

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18 February 2020

Pier Giuseppe Pelicci

10

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18 February 2020

publication date

27 November 2012

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18 February 2020

Genome Research

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18 February 2020

23

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18 February 2020

1

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18 February 2020

1-11

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18 February 2020

Telomeric DNA damage is irreparable and causes persistent DNA-damage-response activation

1 reference

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5 June 2018

Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome

1 reference

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5 June 2018

Genome-wide depletion of replication initiation events in highly transcribed regions

1 reference

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5 June 2018

The midblastula transition defines the onset of Y RNA-dependent DNA replication in Xenopus laevis

1 reference

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5 June 2018

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

1 reference

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Determinants and dynamics of genome accessibility

1 reference

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Preferential localization of human origins of DNA replication at the 5'-ends of expressed genes and at evolutionarily conserved DNA sequences

1 reference

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Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

1 reference

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Chromatin signatures of the Drosophila replication program

1 reference

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5 June 2018

Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription

1 reference

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Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone

1 reference

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5 June 2018

Interaction of the retinoblastoma protein with Orc1 and its recruitment to human origins of DNA replication

1 reference

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5 June 2018

Eukaryotic DNA replication origins: many choices for appropriate answers

1 reference

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5 June 2018

Evaluating genome-scale approaches to eukaryotic DNA replication

1 reference

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A multiprotein complex necessary for both transcription and DNA replication at the β-globin locus

1 reference

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5 June 2018

Transcription: from regulatory ncRNA to incongruent redundancy

1 reference

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Genome-wide estimation of firing efficiencies of origins of DNA replication from time-course copy number variation data

1 reference

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5 June 2018

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

1 reference

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5 June 2018

Interplay between DNA replication and gene expression: a harmonious coexistence

1 reference

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5 June 2018

Conserved nucleosome positioning defines replication origins

1 reference

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5 June 2018

BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

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5 June 2018

Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

1 reference

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5 June 2018

Fast and accurate long-read alignment with Burrows-Wheeler transform

1 reference

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5 June 2018

Defining replication origin efficiency using DNA fiber assays

1 reference

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5 June 2018

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

1 reference

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5 June 2018

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

1 reference

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5 June 2018

Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530669

5 June 2018

Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches.

1 reference

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5 June 2018

A winding road to origin discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530669

5 June 2018

Transcription initiation activity sets replication origin efficiency in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530669

5 June 2018

Global reorganization of replication domains during embryonic stem cell differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530669

5 June 2018

Genome-wide studies highlight indirect links between human replication origins and gene regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530669

5 June 2018

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

1 reference

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5 June 2018

Fine mapping and functional activity of the adenosine deaminase origin in murine embryonic fibroblasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530669

5 June 2018

Tetrahymena ORC contains a ribosomal RNA fragment that participates in rDNA origin recognition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3530669

5 June 2018

Regulating the licensing of DNA replication origins in metazoa

1 reference

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5 June 2018

Mapping of DNA replication origins to noncoding genes of the X-inactivation center

1 reference

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Characteristic low density and shear sensitivity of cross-linked chromatin containing polycomb complexes

1 reference

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Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem.

1 reference

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Identification of a binding region for human origin recognition complex proteins 1 and 2 that coincides with an origin of DNA replication

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication and transcription sites are colocalized in human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/23187890

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos

1 reference

https://pubmed.ncbi.nlm.nih.gov/23187890

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.142331.112

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18 February 2020

release_6qkvfagaibbyzah7zlh6xsmz6e

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24 November 2022

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mapped directly with Wikidata item

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18 February 2020

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Europe PubMed Central

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18 February 2020

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