(Q41904442)

English

Two CRISPR-Cas systems in Methanosarcina mazei strain Gö1 display common processing features despite belonging to different types I and III.

scientific article published on 25 April 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Two CRISPR-Cas systems in Methanosarcina mazei strain Gö1 display common processing features despite belonging to different types I and III. (English)

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

0 references

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Ruth Schmitz-Streit

7

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

object named as

Nadja Heidrich

6

0 references

4

object named as

Rolf Backofen

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

author name string

Lisa Nickel

1

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Katrin Weidenbach

2

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Dominik Jäger

3

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Sita J Lange

5

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

publication date

25 April 2013

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Europe PubMed Central

PMC publication ID

13 October 2017

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

10

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

5

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

779-791

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity

1 reference

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Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information

1 reference

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5 June 2018

An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains.

1 reference

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Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis

1 reference

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5 June 2018

An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA.

1 reference

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Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA

1 reference

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Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax

1 reference

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Global or local? Predicting secondary structure and accessibility in mRNAs

1 reference

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Mechanism of substrate selection by a highly specific CRISPR endoribonuclease

1 reference

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5 June 2018

RNA-guided genetic silencing systems in bacteria and archaea

1 reference

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The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex

1 reference

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Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs.

1 reference

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Structure and Mechanism of the CMR Complex for CRISPR-Mediated Antiviral Immunity

1 reference

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5 June 2018

CRISPR: new horizons in phage resistance and strain identification

1 reference

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Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference

1 reference

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The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli

1 reference

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Recognition and maturation of effector RNAs in a CRISPR interference pathway

1 reference

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5 June 2018

An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Evolution and classification of the CRISPR-Cas systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Interaction of the Cas6 Riboendonuclease with CRISPR RNAs: Recognition and Cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Binding and cleavage of CRISPR RNA by Cas6

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Sequence- and Structure-Specific RNA Processing by a CRISPR Endonuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

CRISPR-Cas: an adaptive immunity system in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA

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5 June 2018

The primary transcriptome of the major human pathogen Helicobacter pylori

1 reference

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Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS.

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5 June 2018

The CRISPR system: small RNA-guided defense in bacteria and archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

CRISPR/Cas, the immune system of bacteria and archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

1 reference

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Protein structure prediction on the Web: a case study using the Phyre server

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5 June 2018

Short motif sequences determine the targets of the prokaryotic CRISPR defence system

1 reference

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CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties

1 reference

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Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

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RNAalifold: improved consensus structure prediction for RNA alignments

1 reference

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Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Small CRISPR RNAs guide antiviral defense in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Insights into the NrpR regulon in Methanosarcina mazei Gö1.

1 reference

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5 June 2018

CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea

1 reference

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5 June 2018

Phage response to CRISPR-encoded resistance in Streptococcus thermophilus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Clustal W and Clustal X version 2.0

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5 June 2018

Evolutionary conservation of sequence and secondary structures in CRISPR repeats

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

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The Methanosarcina barkeri Genome: Comparative Analysis with Methanosarcina acetivorans and Methanosarcina mazei Reveals Extensive Rearrangement within Methanosarcinal Genomes

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Global transcriptional analysis of Methanosarcina mazei strain Gö1 under different nitrogen availabilities

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A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

5 June 2018

Effects of nitrogen and carbon sources on transcription of soluble methyltransferases in Methanosarcina mazei strain Go1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

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CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

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Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

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The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea

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High efficiency transformation of Escherichia coli with plasmids

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RNA processing enables predictable programming of gene expression

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18 August 2018

Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein.

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18 August 2018

Deletion of the archaeal histone in Methanosarcina mazei Gö1 results in reduced growth and genomic transcription

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18 August 2018

Diversity of microRNAs in human and chimpanzee brain

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The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes.

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18 August 2018

Local RNA base pairing probabilities in large sequences.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737336

18 August 2018

Development of genetic methods and construction of a chromosomal glnK1 mutant in Methanosarcina mazei strain Gö1.

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18 August 2018

Fast folding and comparison of RNA secondary structures

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21 January 2018

Identifiers

10.4161/RNA.23928

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

ResearchGate publication ID

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