(Q41909878)

14 October 2017

Estimating the length of transmembrane helices using Z-coordinate predictions (English)

1 reference

14 October 2017

transmembrane protein

0 references

author

Arne Elofsson

series ordinal

4

1 reference

14 October 2017

Costas Papaloukas

1

0 references

author name string

Erik Granseth

series ordinal

2

1 reference

PMCID

2222713

14 October 2017

Håkan Viklund

series ordinal

3

1 reference

14 October 2017

20 December 2007

1 reference

14 October 2017

1 reference

14 October 2017

17

1 reference

14 October 2017

271-278

1 reference

14 October 2017

2

1 reference

Membrane protein structure: prediction versus reality.

14 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Improving the accuracy of transmembrane protein topology prediction using evolutionary information

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Quasi-symmetry in the cryo-EM structure of EmrE provides the key to modeling its transmembrane domain

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

OPM: orientations of proteins in membranes database

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

The Universal Protein Resource (UniProt): an expanding universe of protein information

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Structure of the KvAP voltage-dependent K+ channel and its dependence on the lipid membrane

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

A study of the membrane-water interface region of membrane proteins.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

A combined transmembrane topology and signal peptide prediction method

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

The HMMTOP transmembrane topology prediction server

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

AAindex: amino acid index database

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

5 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Protein secondary structure prediction based on position-specific scoring matrices

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Membrane protein folding and stability: physical principles

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Topology prediction for helical transmembrane proteins at 86% accuracy

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Structural classification and prediction of reentrant regions in alpha-helical transmembrane proteins: application to complete genomes.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

An HMM posterior decoder for sequence feature prediction that includes homology information.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2222713

18 August 2018

Identifiers

DOI

10.1110/PS.073036108

1 reference

release_gab26fouhrehxli6oss56qjhxa

14 October 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/gab26fouhrehxli6oss56qjhxa

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

2222713

1 reference

14 October 2017

1 reference

PMCID

2222713