(Q41946541)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

title

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Cornelia M Hooper

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Ian Small

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

A. Harvey Millar

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

author name string

Ian Castleden

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Michael Vacher

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

publication date

24 November 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

volume

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

issue

Database issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

page(s)

D1185-91

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

18 February 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3531127

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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1 reference

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Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity

5 June 2018

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The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

5 June 2018

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5 June 2018

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Evidence for network evolution in an Arabidopsis interactome map.

5 June 2018

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MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data

5 June 2018

1 reference

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Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

5 June 2018

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Plant-mPLoc: a top-down strategy to augment the power for predicting plant protein subcellular localization

5 June 2018

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YLoc--an interpretable web server for predicting subcellular localization

5 June 2018

1 reference

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AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins

5 June 2018

1 reference

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AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis

5 June 2018

1 reference

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MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

5 June 2018

1 reference

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A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

5 June 2018

1 reference

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The UniProtKB/Swiss-Prot knowledgebase and its plant proteome annotation program

5 June 2018

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AmiGO: online access to ontology and annotation data

5 June 2018

1 reference

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Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition

5 June 2018

1 reference

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WoLF PSORT: protein localization predictor

5 June 2018

1 reference

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SUBA: the Arabidopsis Subcellular Database.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

BaCelLo: a balanced subcellular localization predictor

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

PredSL: a tool for the N-terminal sequence-based prediction of protein subcellular localization

5 June 2018

1 reference

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A novel representation of protein sequences for prediction of subcellular location using support vector machines

5 June 2018

1 reference

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MITOPRED: a web server for the prediction of mitochondrial proteins

5 June 2018

1 reference

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Genome-wide insertional mutagenesis of Arabidopsis thaliana

5 June 2018

1 reference

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Extensive feature detection of N-terminal protein sorting signals

5 June 2018

1 reference

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Chloroplast transit peptide prediction: a peek inside the black box.

5 June 2018

1 reference

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Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

5 June 2018

1 reference

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ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Computational method to predict mitochondrially imported proteins and their targeting sequences

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

In silico methods for identifying organellar and suborganellar targeting peptides in Arabidopsis chloroplast proteins and for predicting the topology of membrane proteins

5 June 2018

1 reference

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Exploring the function-location nexus: using multiple lines of evidence in defining the subcellular location of plant proteins.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Prediction of dual protein targeting to plant organelles.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

EpiLoc: a (working) text-based system for predicting protein subcellular location.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Predicting nuclear localization.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Detecting and sorting targeting peptides with neural networks and support vector machines.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

ARAMEMNON, a novel database for Arabidopsis integral membrane proteins

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Support vector machine approach for protein subcellular localization prediction

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531127

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

18 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKS1151

21 January 2018

Identifiers

DOI

10.1093/NAR/GKS1151

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

DBLP publication ID

journals/nar/TanzCHVSM13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23180787%20AND%20SRC:MED&resulttype=core&format=json