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Functional and topological characteristics of mammalian regulatory domains.
scientific article published on 7 January 2014
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title
Functional and topological characteristics of mammalian regulatory domains
(English)
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Orsolya Symmons
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1
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Taro Tsujimura
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Sonya Nassari
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Wibke Schwarzer
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Laurence M Ettwiller
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Francois Spitz
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Sandra Ruf
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Veli Vural Uslu
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publication date
7 January 2014
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published in
Genome Research
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volume
24
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issue
3
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page(s)
390-400
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4 March 2020
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Undulated short-tail deletion mutation in the mouse ablates Pax1 and leads to ectopic activation of neighboring Nkx2-2 in domains that normally express Pax1.
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A global control region defines a chromosomal regulatory landscape containing the HoxD cluster
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Activation of cardiac gene expression by myocardin, a transcriptional cofactor for serum response factor
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
5 June 2018
A BAC transgenic analysis of the Mrf4/Myf5 locus reveals interdigitated elements that control activation and maintenance of gene expression during muscle development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
5 June 2018
Different core promoters possess distinct regulatory activities in the Drosophila embryo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
5 June 2018
Expression of a β-globin gene is enhanced by remote SV40 DNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
5 June 2018
Chromatin position effects assayed by thousands of reporters integrated in parallel.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
A switch between topological domains underlies HoxD genes collinearity in mouse limbs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
Enhancers: from developmental genetics to the genetics of common human disease.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and coregulation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawn.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
Expression of the NET family member Zfp503 is regulated by hedgehog and BMP signaling in the limb
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
FGF regulated gene-expression and neuronal differentiation in the developing midbrain-hindbrain region.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
An inversion involving the mouse Shh locus results in brachydactyly through dysregulation of Shh expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
Target-site preferences of Sleeping Beauty transposons.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
The beta-globin nuclear compartment in development and erythroid differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
Functional analysis of chicken Sox2 enhancers highlights an array of diverse regulatory elements that are conserved in mammals.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941104
retrieved
18 August 2018
Mouse brain organization revealed through direct genome-scale TF expression analysis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24398455
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1101/GR.163519.113
1 reference
stated in
Europe PubMed Central
PMCID
3941104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24398455%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
PMCID
3941104
1 reference
stated in
Europe PubMed Central
PMCID
3941104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24398455%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
PubMed ID
24398455
1 reference
stated in
Europe PubMed Central
PMCID
3941104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24398455%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
ResearchGate publication ID
259626989
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