(Q42060922)

English

Thermodynamics of loop formation in the denatured state of rhodopseudomonas palustris cytochrome c': scaling exponents and the reconciliation problem

scientific article published on 6 August 2009

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Thermodynamics of loop formation in the denatured state of rhodopseudomonas palustris cytochrome c': scaling exponents and the reconciliation problem (English)

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

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Rhodopseudomonas palustris

object named as

rhodopseudomonas palustris

1 reference

based on heuristic

inferred from title

author name string

K Sudhindra Rao

1

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Franco O Tzul

2

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Arwen K Christian

3

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Tia N Gordon

4

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Bruce E Bowler

5

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

language of work or name

0 references

publication date

6 August 2009

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

392

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

5

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

1315-1325

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins

1 reference

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5 June 2018

Zinc porphyrin: a fluorescent acceptor in studies of Zn-cytochrome c unfolding by fluorescence resonance energy transfer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Denatured-state energy landscapes of a protein structural database reveal the energetic determinants of a framework model for folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Probing the cytochrome c' folding landscape

1 reference

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5 June 2018

Sequence composition effects on denatured state loop formation in iso-1-cytochrome c variants: polyalanine versus polyglycine inserts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Improved structural characterizations of the drkN SH3 domain unfolded state suggest a compact ensemble with native-like and non-native structure

1 reference

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5 June 2018

Atomic-level characterization of disordered protein ensembles

1 reference

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5 June 2018

Thermodynamics of protein denatured states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Is there or isn't there? The case for (and against) residual structure in chemically denatured proteins

1 reference

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5 June 2018

Determination of ultrafast protein folding rates from loop formation dynamics

1 reference

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5 June 2018

Reassessing random-coil statistics in unfolded proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Random-coil behavior and the dimensions of chemically unfolded proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Evaluation of cooperative interactions between substructures of iso-1-cytochrome c using double mutant cycles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Structural features of cytochrome c' folding intermediates revealed by fluorescence energy-transfer kinetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Effects of topology and excluded volume on protein denatured state conformational properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Denatured state thermodynamics: residual structure, chain stiffness and scaling factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Cytochrome c' folding triggered by electron transfer: fast and slow formation of four-helix bundles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Measuring the rate of intramolecular contact formation in polypeptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

The speed limit for protein folding measured by triplet-triplet energy transfer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Basis for monomer stabilization in Rhodopseudomonas palustris cytochrome c' derived from the crystal structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Helix propagation and N-cap propensities of the amino acids measured in alanine-based peptides in 40 volume percent trifluoroethanol

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Structural analysis of non-native states of proteins by NMR methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Elucidating the folding problem of helical peptides using empirical parameters. III. Temperature and pH dependence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Theoretical predictions of folding pathways by using the proximity rule, with applications to bovine pancreatic trypsin inhibitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Protein Denaturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

Denatured states of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

5 June 2018

The low-pH unfolded state of the C-terminal domain of the ribosomal protein L9 contains significant secondary structure in the absence of denaturant but is no more compact than the low-pH urea unfolded state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Reconciling observations of sequence-specific conformational propensities with the generic polymeric behavior of denatured proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Effect of proline and glycine residues on dynamics and barriers of loop formation in polypeptide chains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Communication of stabilizing energy between substructures of a protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Many faces of the unfolded state: conformational heterogeneity in denatured yeast cytochrome C.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Conformational properties of the iso-1-cytochrome C denatured state: dependence on guanidine hydrochloride concentration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Kinetics of intramolecular contact formation in a denatured protein

1 reference

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17 August 2018

Effect of pH on the iso-1-cytochrome c denatured state: changing constraints due to heme ligation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Cloning, heterologous expression, and characterization of recombinant class II cytochromes c from Rhodopseudomonas palustris

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Mapping the cytochrome C folding landscape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Long-range interactions within a nonnative protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2754802

17 August 2018

Misfolded loops decrease the effective rate of DNA hairpin formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19647747

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of intra-molecular distances and site-specific dynamics in chemically unfolded barstar: evidence for denaturant-dependent non-random structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/19647747

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteins in 6-M guanidine hydrochloride. Demonstration of random coil behavior

1 reference

https://pubmed.ncbi.nlm.nih.gov/19647747

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR determination of residual structure in a urea-denatured protein, the 434-repressor

1 reference

https://pubmed.ncbi.nlm.nih.gov/19647747

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alpha-helix formation by peptides of defined sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/19647747

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A lysine 73-->histidine variant of yeast iso-1-cytochrome c: evidence for a native-like intermediate in the unfolding pathway and implications for m value effects

1 reference

https://pubmed.ncbi.nlm.nih.gov/19647747

12 December 2020

based on heuristic

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Overproduction of theBradyrhizobium japonicum c-Type Cytochrome Subunits of thecbb3Oxidase inEscherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/19647747

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2009.07.074

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

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