(Q42082546)

16 October 2017

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series (English)

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16 October 2017

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3

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16 October 2017

2

Sonia Tarazona

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María José Nueda

series ordinal

1

object named as

María José Nueda

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language of work or name

English

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publication date

3 June 2014

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16 October 2017

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16 October 2017

30

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16 October 2017

18

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16 October 2017

2598-2602

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Creative Commons Attribution 3.0 Unported

16 October 2017

start time

14 November 2016

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April 2023 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

DESeq2

object named as

DEseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Sequencing depth and coverage: key considerations in genomic analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

RNA-seq differential expression studies: more sequence or more replication?

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Conservation of NLR-triggered immunity across plant lineages

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Streaming fragment assignment for real-time analysis of sequencing experiments

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

GC-content normalization for RNA-Seq data

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Differential expression in RNA-seq: a matter of depth

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Differential expression analysis for sequence count data

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Serial Expression Analysis: a web tool for the analysis of serial gene expression data

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

A scaling normalization method for differential expression analysis of RNA-seq data

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Functional assessment of time course microarray data

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Transcriptional profiling of mRNA expression in the mouse distal colon

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Mapping and quantifying mammalian transcriptomes by RNA-Seq

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Spatial differentiation in the vegetative mycelium of Aspergillus niger

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155246

ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments

17 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU333

10.1093/BIOINFORMATICS/BTU333

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/NuedaTC14

16 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

4155246

16 October 2017

PubMed publication ID

24894503

1 reference

PMC publication ID

4155246