(Q42113314)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

title

Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNAseq, RNA interference and irradiation approach (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

0 references

1 reference

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Aziz A. Aboobaker

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

author name string

Damian Kao

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Yuliana Mihaylova

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Farah Jaber-Hijazi

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Sunir Malla

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Ray Wilson

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

publication date

1 January 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

page(s)

R19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

26 January 2020

1 reference

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3439970/fullTextXML

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1186/gb-2012-13-3-r19

0 references

cites work

An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming

1 reference

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The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling

29 May 2018

1 reference

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From unwinding to clamping - the DEAD box RNA helicase family

29 May 2018

1 reference

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The transcriptional and signalling networks of pluripotency

29 May 2018

1 reference

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De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

29 May 2018

1 reference

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A proteomics approach to decipher the molecular nature of planarian stem cells

29 May 2018

1 reference

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Planarian stem cells: a simple paradigm for regeneration.

29 May 2018

1 reference

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Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

29 May 2018

1 reference

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A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The planarian flatworm: an in vivo model for stem cell biology and nervous system regeneration

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The use of lectins as markers for differentiated secretory cells in planarians.

29 May 2018

1 reference

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Systematic analysis of posttranscriptional gene expression

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Planarian regeneration involves distinct stem cell responses to wounds and tissue absence

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Building RNA-protein granules: insight from the germline

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation

29 May 2018

1 reference

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Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The TALE class homeobox gene Smed-prep defines the anterior compartment for head regeneration

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The Mi-2-like Smed-CHD4 gene is required for stem cell differentiation in the planarian Schmidtea mediterranea

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The genetics of induced pluripotency

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The biogenesis and function of PIWI proteins and piRNAs: progress and prospect

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

High-resolution profiling and discovery of planarian small RNAs.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

RNA granules: post-transcriptional and epigenetic modulators of gene expression

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Spoltud-1 is a chromatoid body component required for planarian long-term stem cell self-renewal

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

29 May 2018

1 reference

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Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterranea

29 May 2018

1 reference

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Multiple layers of molecular controls modulate self-renewal and neuronal lineage specification of embryonic stem cells

29 May 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

29 May 2018

1 reference

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Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Alternative splicing events identified in human embryonic stem cells and neural progenitors

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

SmedGD: the Schmidtea mediterranea genome database

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Regeneration and maintenance of the planarian midline is regulated by a slit orthologue.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

KAAS: an automatic genome annotation and pathway reconstruction server

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Deciphering the molecular machinery of stem cells: a look at the neoblast gene expression profile

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

nanos function is essential for development and regeneration of planarian germ cells.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Morphogenesis defects are associated with abnormal nervous system regeneration following roboA RNAi in planarians

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Pathway to totipotency: lessons from germ cells

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Dendritic protein synthesis, synaptic plasticity, and memory

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Neuronal RNA granules: movers and makers

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Bruno acts as a dual repressor of oskar translation, promoting mRNA oligomerization and formation of silencing particles

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: analysis of ESTs from the hermaphroditic strain

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Diversification of stem cell molecular repertoire by alternative splicing.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

DjPum, a homologue of Drosophila Pumilio, is essential to planarian stem cell maintenance

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Allometric scaling and proportion regulation in the freshwater planarian Schmidtea mediterranea

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The function and regulation of vasa-like genes in germ-cell development

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Gene ontology: tool for the unification of biology

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Double-stranded RNA specifically disrupts gene expression during planarian regeneration

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Observations on the ultrastructure of nerve cells in the brain of the planarian, Dugesia gonocephala

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Basic local alignment search tool

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Different requirements for conserved post-transcriptional regulators in planarian regeneration and stem cell maintenance.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Diverse miRNA spatial expression patterns suggest important roles in homeostasis and regeneration in planarians.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Silencing of Smed-betacatenin1 generates radial-like hypercephalized planarians.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

DjCBC-1, a conserved DEAD box RNA helicase of the RCK/p54/Me31B family, is a component of RNA-protein complexes in planarian stem cells and neurons.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

smedinx-11 is a planarian stem cell gap junction gene required for regeneration and homeostasis.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The planarian nanos-like gene Smednos is expressed in germline and eye precursor cells during development and regeneration.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The role of Tudor domains in germline development and polar granule architecture

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

A Bruno-like gene is required for stem cell maintenance in planarians

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

An in situ hybridization protocol for planarian embryos: monitoring myosin heavy chain gene expression.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Distribution of the stem cells (neoblasts) in the planarian Dugesia japonica.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

A novel invertebrate trophic factor related to invertebrate neurotrophins is involved in planarian body regional survival and asexual reproduction.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

The body margin of the planarian Dugesia japonica: characterization by the expression of an intermediate filament gene

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Chromatoid bodies in somatic cells of the planarian: observations on their behavior during mitosis

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439970

Bromodeoxyuridine Specifically Labels the Regenerative Stem Cells of Planarians

1 December 2018

1 reference

12 December 2020

Fine structure studies on the planarian, Dugesia. I. Nature of the "neoblast" and other cell types in noninjured worms

1 reference

12 December 2020

Identification and origin of the germline stem cells as revealed by the expression of nanos-related gene in planarians

1 reference

12 December 2020

Gene annotation and pathway mapping in KEGG

1 reference

12 December 2020

Smed-SmB, a member of the LSm protein superfamily, is essential for chromatoid body organization and planarian stem cell proliferation

1 reference

12 December 2020

Noggin and Noggin-Like Genes Control Dorsoventral Axis Regeneration in Planarians

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2012-13-3-R19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

26 January 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/gb-2012-13-3-r19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

PubMed publication ID

22439894

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22439894%20AND%20SRC:MED&resulttype=core&format=json