(Q42121580)

English

The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner

scientific article published on 18 June 2012

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scholarly article

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Europe PubMed Central

PMC publication ID

16 October 2017

The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner (English)

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Europe PubMed Central

PMC publication ID

16 October 2017

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16 October 2017

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16 October 2017

Manuel Rosa-Garrido

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Manuel Rosa-Garrido

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Wilfred F J van IJcken

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Wilfred van Ijcken

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Niels Galjart

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16 October 2017

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Frank Sleutels

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Europe PubMed Central

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16 October 2017

Widia Soochit

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16 October 2017

Marek Bartkuhn

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16 October 2017

Helen Heath

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16 October 2017

Sven Dienstbach

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16 October 2017

Philipp Bergmaier

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16 October 2017

Suzanne van de Nobelen

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16 October 2017

Lisa Caesar

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16 October 2017

Michael van der Reijden

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16 October 2017

Jan Christian Bryne

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J Anton Grootegoed

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M Dolores Delgado

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Rainer Renkawitz

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Frank Grosveld

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16 October 2017

publication date

18 June 2012

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16 October 2017

Epigenetics & Chromatin

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16 October 2017

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16 October 2017

1

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16 October 2017

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16 October 2017

copyright license

Creative Commons Attribution 2.0 Generic

18 June 2012

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April 2022 Public Data File from Crossref

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April 2022 Public Data File from Crossref

describes a project that uses

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limma

2 references

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/3418201

based on heuristic

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/1756-8935-5-8

0 references

Genomic imprinting and its relevance to congenital disease, infertility, molar pregnancy and induced pluripotent stem cell.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

CTCF-mediated functional chromatin interactome in pluripotent cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Transcription factor BORIS (Brother of the Regulator of Imprinted Sites) directly induces expression of a cancer-testis antigen, TSP50, through regulated binding of BORIS to the promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Determinants of nucleosome organization in primary human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

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RAD21 cooperates with pluripotency transcription factors in the maintenance of embryonic stem cell identity

1 reference

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TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

1 reference

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29 May 2018

Specific sites in the C terminus of CTCF interact with the SA2 subunit of the cohesin complex and are required for cohesin-dependent insulation activity

1 reference

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29 May 2018

Coordinated cancer germline antigen promoter and global DNA hypomethylation in ovarian cancer: association with the BORIS/CTCF expression ratio and advanced stage

1 reference

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

1 reference

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The structural complexity of the human BORIS gene in gametogenesis and cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

CTCF regulates the local epigenetic state of ribosomal DNA repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

BORIS/CTCFL-mediated transcriptional regulation of the hTERT telomerase gene in testicular and ovarian tumor cells

1 reference

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29 May 2018

Mediator and cohesin connect gene expression and chromatin architecture

1 reference

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29 May 2018

A systems approach to analyze transcription factors in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

BORIS/CTCFL expression is insufficient for cancer-germline antigen gene expression and DNA hypomethylation in ovarian cell lines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

c-Myc regulates transcriptional pause release

1 reference

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29 May 2018

Expression of a testis-specific form of Gal3st1 (CST), a gene essential for spermatogenesis, is regulated by the CTCF paralogous gene BORIS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Distinct factors control histone variant H3.3 localization at specific genomic regions

1 reference

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29 May 2018

Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

CTCF: master weaver of the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

The cohesin complex and its roles in chromosome biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

CTCF regulates cell cycle progression of alphabeta T cells in the thymus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

STRA8-deficient spermatocytes initiate, but fail to complete, meiosis and undergo premature chromosome condensation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Stra8 and its inducer, retinoic acid, regulate meiotic initiation in both spermatogenesis and oogenesis in mice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Model-based analysis of ChIP-Seq (MACS)

1 reference

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29 May 2018

The evolution of epigenetic regulators CTCF and BORIS/CTCFL in amniotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

BAT3 and SET1A form a complex with CTCFL/BORIS to modulate H3K4 histone dimethylation and gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Long range chromatin interactions involved in gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

1 reference

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29 May 2018

CTCF physically links cohesin to chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Expression of stimulated by retinoic acid gene 8 (Stra8) in spermatogenic cells induced by retinoic acid: an in vivo study in vitamin A-sufficient postnatal murine testes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Cohesins functionally associate with CTCF on mammalian chromosome arms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

Cohesin mediates transcriptional insulation by CCCTC-binding factor

1 reference

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29 May 2018

The vertebrate genome annotation (Vega) database

1 reference

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29 May 2018

Culture and genetic modification of mouse germline stem cells

1 reference

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29 May 2018

Nucleosome stability mediated by histone variants H3.3 and H2A.Z.

1 reference

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29 May 2018

Genomic and expression profiling of human spermatocytic seminomas: pathogenetic implications.

1 reference

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Global gene expression profiling reveals similarities and differences among mouse pluripotent stem cells of different origins and strains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

High-resolution profiling of histone methylations in the human genome

1 reference

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29 May 2018

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

CTCF-dependent chromatin boundary element between the latency-associated transcript and ICP0 promoters in the herpes simplex virus type 1 genome

1 reference

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The potential of BORIS detected in the leukocytes of breast cancer patients as an early marker of tumorigenesis

1 reference

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29 May 2018

The testis-specific factor CTCFL cooperates with the protein methyltransferase PRMT7 in H19 imprinting control region methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3418201

29 May 2018

CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2

1 reference

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29 May 2018

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

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29 May 2018

The microtubule plus-end-tracking protein CLIP-170 associates with the spermatid manchette and is essential for spermatogenesis

1 reference

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Reciprocal binding of CTCF and BORIS to the NY-ESO-1 promoter coincides with derepression of this cancer-testis gene in lung cancer cells

1 reference

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Conditional expression of the CTCF-paralogous transcriptional factor BORIS in normal cells results in demethylation and derepression of MAGE-A1 and reactivation of other cancer-testis genes

1 reference

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A germ cell origin of embryonic stem cells?

1 reference

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Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.

1 reference

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Cell junction dynamics in the testis: Sertoli-germ cell interactions and male contraceptive development

1 reference

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BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma

1 reference

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Paranodal junction formation and spermatogenesis require sulfoglycolipids

1 reference

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The non-coding Air RNA is required for silencing autosomal imprinted genes

1 reference

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29 May 2018

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1 reference

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1 reference

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Critical role for the transcription regulator CCCTC-binding factor in the control of Th2 cytokine expression.

1 reference

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1 reference

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Localization and expression of TSP50 protein in human and rodent testes

1 reference

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Derivation of embryonic germ cells and male gametes from embryonic stem cells.

1 reference

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17 August 2018

Identifiers

10.1186/1756-8935-5-8

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1756-8935-5-8

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

ResearchGate publication ID

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