(Q42164230)

English

Thermal unfolding molecular dynamics simulation of Escherichia coli dihydrofolate reductase: thermal stability of protein domains and unfolding pathway

scientific article published on February 2002

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scholarly article

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Europe PubMed Central

PubMed publication ID

17 October 2017

Thermal unfolding molecular dynamics simulation of Escherichia coli dihydrofolate reductase: thermal stability of protein domains and unfolding pathway (English)

1 reference

Europe PubMed Central

PubMed publication ID

17 October 2017

Escherichia coli

1 reference

based on heuristic

inferred from title

2

1 reference

Europe PubMed Central

PubMed publication ID

17 October 2017

object named as

Yuk Yin Sham

1

0 references

4

object named as

Ruth Nussinov

1 reference

Europe PubMed Central

PubMed publication ID

17 October 2017

Chung-Jung Tsai

3

object named as

Chung-Jung Tsai

1 reference

Europe PubMed Central

PubMed publication ID

17 October 2017

language of work or name

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publication date

1 February 2002

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Europe PubMed Central

PubMed publication ID

17 October 2017

number of pages

13

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based on heuristic

inferred from page(s)

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Europe PubMed Central

PubMed publication ID

17 October 2017

46

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Europe PubMed Central

PubMed publication ID

17 October 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

17 October 2017

308-320

1 reference

Europe PubMed Central

PubMed publication ID

17 October 2017

Toward an outline of the topography of a realistic protein-folding funnel

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Polymer principles and protein folding

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Computer simulation of protein folding

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Hierarchy of structure loss in MD simulations of src SH3 domain unfolding.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Staphylococcal protein A: unfolding pathways, unfolded states, and differences between the B and E domains

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Folding of dihydrofolate reductase from Escherichia coli.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Refolding of Escherichia coli dihydrofolate reductase: sequential formation of substrate binding sites

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

A reexamination of the folding mechanism of dihydrofolate reductase from Escherichia coli: verification and refinement of a four-channel model.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

A Strategy for Testing the Suitability of Cysteine Replacements in Dihydrofolate Reductase from Escherichia coli1

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Acid and thermal unfolding of Escherichia coli dihydrofolate reductase.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Transient intermediates in the folding of dihydrofolate reductase as detected by far-ultraviolet circular dichroism spectroscopy.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Effective energy function for proteins in solution

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Crystal structure of unliganded Escherichia coli dihydrofolate reductase. Ligand-induced conformational changes and cooperativity in binding

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Crystal structures of Escherichia coli dihydrofolate reductase: the NADP+ holoenzyme and the folate.NADP+ ternary complex. Substrate binding and a model for the transition state

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Molecular dynamics simulation of Escherichia coli dihydrofolate reductase and its protein fragments: relative stabilities in experiment and simulations

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Probing minimal independent folding units in dihydrofolate reductase by molecular dissection

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Binding and folding: in search of intramolecular chaperone-like building block fragments.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Is protein folding hierarchic? I. Local structure and peptide folding

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Is protein folding hierarchic? II. Folding intermediates and transition states

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Protein folding dynamics: the diffusion-collision model and experimental data

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Foldons, protein structural modules, and exons

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Folding funnels, binding funnels, and protein function

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Anatomy of protein structures: visualizing how a one-dimensional protein chain folds into a three-dimensional shape

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Nucleation, rapid folding, and globular intrachain regions in proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Real-time refolding studies of 6-19F-tryptophan labeled Escherichia coli dihydrofolate reductase using stopped-flow NMR spectroscopy.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

The foldon universe: a survey of structural similarity and self-recognition of independently folding units 1 1Edited by F. E. Cohen

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Are there pathways for protein folding?

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Acid and thermal denaturation of barnase investigated by molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Calculations on folding of segment B1 of streptococcal protein G

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Computer simulations of protein folding by targeted molecular dynamics

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Detection of a stable intermediate in the thermal unfolding of a cysteine-free form of dihydrofolate reductase from Escherichia coli

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Simulation of activation free energies in molecular systems

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

On the unfolding of alpha-lytic protease and the role of the pro region

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Strength of an interloop hydrogen bond determines the kinetic pathway in catalysis by Escherichia coli dihydrofolate reductase

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10040

21 January 2018

Identifiers

10.1002/PROT.10040

1 reference

Europe PubMed Central

PubMed publication ID

17 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

17 October 2017

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