Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q42211335)
Watch
English
brain-coX: investigating and visualising gene co-expression in seven human brain transcriptomic datasets
scientific article published on 8 June 2017
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
title
brain-coX: investigating and visualising gene co-expression in seven human brain transcriptomic datasets
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
main subject
transcriptome
0 references
author
Karen Oliver
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
author name string
Saskia Freytag
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
Rosemary Burgess
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
Melanie Bahlo
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
publication date
8 June 2017
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
published in
Genome Medicine
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
volume
9
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
issue
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
page(s)
55
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
describes a project that uses
WGCNA
object named as
WGCNA
1 reference
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
exact match
https://scigraph.springernature.com/pub.10.1186/s13073-017-0444-y
0 references
cites work
In silico prioritization based on coexpression can aid epileptic encephalopathy gene discovery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Schizophrenia risk from complex variation of complement component 4
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
KEGG as a reference resource for gene and protein annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Systematic noise degrades gene co-expression signals but can be corrected
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
PsyGeNET: a knowledge platform on psychiatric disorders and their genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
GeneTIER: prioritization of candidate disease genes using tissue-specific gene expression profiles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Integration of gene expression and GWAS results supports involvement of calcium signaling in Schizophrenia
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Specific and common genes implicated across major mental disorders: a review of meta-analysis studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Experience and the ever-changing brain: what the transcriptome can reveal
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
The diverse genetic landscape of neurodevelopmental disorders.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Harnessing gene expression networks to prioritize candidate epileptic encephalopathy genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Transcriptional landscape of the prenatal human brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
DAWN: a framework to identify autism genes and subnetworks using gene expression and genetics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Beyond modules and hubs: the potential of gene coexpression networks for investigating molecular mechanisms of complex brain disorders
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Widespread sex differences in gene expression and splicing in the adult human brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
The NIMH Research Domain Criteria (RDoC) Project: implications for genetics research
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
An anatomically comprehensive atlas of the adult human brain transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Computational tools for prioritizing candidate genes: boosting disease gene discovery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Integration of GWAS SNPs and tissue specific expression profiling reveal discrete eQTLs for human traits in blood and brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Computational approaches to disease-gene prediction: rationale, classification and successes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Using control genes to correct for unwanted variation in microarray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Temporal dynamics and genetic control of transcription in the human prefrontal cortex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Spatio-temporal transcriptome of the human brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Rare de novo variants associated with autism implicate a large functional network of genes involved in formation and function of synapses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Linking genes to diseases: it's all in the data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
The onset of autism: patterns of symptom emergence in the first years of life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
WGCNA: an R package for weighted correlation network analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Empirical Bayes accomodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Gene prioritization through genomic data fusion
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Adjusting batch effects in microarray expression data using empirical Bayes methods
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
26 October 2017
SFARI Gene: an evolving database for the autism research community.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465565
retrieved
17 August 2018
Exome sequencing of extended families with autism reveals genes shared across neurodevelopmental and neuropsychiatric disorders
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1186%2FS13073-017-0444-Y
retrieved
21 January 2018
Identifiers
DOI
10.1186/S13073-017-0444-Y
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
Dimensions Publication ID
1085937046
0 references
PMC publication ID
5465565
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
PubMed publication ID
28595657
1 reference
stated in
Europe PubMed Central
PMC publication ID
5465565
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28595657%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit