(Q42220191)

18 October 2017

Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds (English)

1 reference

18 October 2017

1,2,4-trihydroxybenzene

2 references

ChEBI release 2020-05-28

Pseudomonas knackmussii

Pseudomonas knackmussii

1 reference

1 reference

9

1 reference

18 October 2017

16

1 reference

18 October 2017

Marc Robinson-Rechavi

15

Marc Robinson-Rechavi

0 references

Jan Roelof van der Meer

22

Jan Roelof van der Meer

1 reference

18 October 2017

Walid H Gharib

6

0 references

Ryo Miyazaki

Ryo Miyazaki

1

0 references

Laurent Falquet

Laurent Falquet

21

0 references

Alexander Goesmann

Alexander Goesmann

8

0 references

Claire Bertelli

2

Claire Bertelli

1 reference

18 October 2017

19

Vladimir Sentchilo

1 reference

18 October 2017

11

Burkhard Linke

1 reference

18 October 2017

3

Paola Benaglio

1 reference

18 October 2017

Jonas Canton

4

1 reference

18 October 2017

Nicoló De Coi

5

1 reference

18 October 2017

Bebeka Gjoksi

7

1 reference

18 October 2017

Keith Harshman

10

1 reference

18 October 2017

Josip Mikulic

12

1 reference

18 October 2017

Linda Mueller

13

1 reference

18 October 2017

Damien Nicolas

14

1 reference

18 October 2017

Clémence Roggo

17

1 reference

18 October 2017

Shantanu Roy

18

1 reference

18 October 2017

Alexandra Von Siebenthal

20

1 reference

18 October 2017

28 May 2014

1 reference

full work available at URL

18 October 2017

https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/1462-2920.12498

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.1111/1462-2920.12498?email=unpaywall_01@example.com

published in

Environmental Microbiology

1 reference

18 October 2017

17

1 reference

18 October 2017

1

1 reference

18 October 2017

91-104

1 reference

https://api.unpaywall.org/v2/10.1111/1462-2920.12498?email=unpaywall_01@example.com

18 October 2017

1 reference

19 March 2024

access restriction status

open access

1 reference

based on heuristic

inferred from online access status

cites work

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

The homogentisate pathway: a central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Hybrid pathogenicity island PAGI-5 contributes to the highly virulent phenotype of a Pseudomonas aeruginosa isolate in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

DNAPlotter: circular and linear interactive genome visualization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

From the test tube to the environment - and back

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Consed: a graphical tool for sequence finishing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Biological control of soil-borne pathogens by fluorescent pseudomonads

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

The TIGRFAMs database of protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

The beta-ketoadipate pathway and the biology of self-identity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

The bacterial segrosome: a dynamic nucleoprotein machine for DNA trafficking and segregation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Functional analysis of the post-transcriptional regulator RsmA reveals a novel RNA-binding site.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

KEGG for integration and interpretation of large-scale molecular data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Pseudomonas aeruginosa Genomic Structure and Diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Comparative genomic analysis of 18 Pseudomonas aeruginosa bacteriophages

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

State of the art de novo assembly of human genomes from massively parallel sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Pseudomonas syringae type III effector repertoires: last words in endless arguments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Pseudomonas syringae pv. actinidiae draft genomes comparison reveal strain-specific features involved in adaptation and virulence to Actinidia species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Differential expression of the components of the two alkane hydroxylases from Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Primer-initiated sequence synthesis to detect and assemble structural variants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Dynamics of Pseudomonas aeruginosa genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

GenDB--an open source genome annotation system for prokaryote genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

GenomeMatcher: a graphical user interface for DNA sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

From The Origin of Species to the origin of bacterial flagella

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

A family of positive regulators related to the Pseudomonas putida TOL plasmid XylS and the Escherichia coli AraC activators

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Characterization of the Pseudomonas putida mobile genetic element ISPpu10: an occupant of repetitive extragenic palindromic sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Microbial degradation of haloaromatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Cell differentiation to "mating bodies" induced by an integrating and conjugative element in free-living bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Integrative genomics viewer

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Characterization of the pcaR regulatory gene from Pseudomonas putida, which is required for the complete degradation of p-hydroxybenzoate

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Artemis: sequence visualization and annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Plant-bacteria interactions in the removal of pollutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Pseudomonas genomes: diverse and adaptable

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Production of rhamnolipids by Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Pseudomonas knackmussii sp. nov

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

The COG database: a tool for genome-scale analysis of protein functions and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Bacterial phenylalanine and phenylacetate catabolic pathway revealed

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Reorganizing the protein space at the Universal Protein Resource (UniProt)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Burkholderia thailandensis E125 harbors a temperate bacteriophage specific for Burkholderia mallei.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

PHAST: a fast phage search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

Construction of haloaromatics utilising bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12498

21 January 2018

Identifiers

DOI

10.1111/1462-2920.12498

1 reference

18 October 2017

1 reference