(Q42223716)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25185517%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25185517%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

3

1 reference

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16 February 2020

author name string

Heidi S Alvey

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25185517%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Federico L Gottardo

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25185517%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Hashim M Al-Hashimi

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25185517%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

language of work or name

English

0 references

publication date

4 September 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25185517%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

published in

Nature Communications

1 reference

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16 February 2020

volume

5

1 reference

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16 February 2020

page(s)

4786

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25185517%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/ncomms5786

16 February 2020

exact match

0 references

cites work

Chemical exchange in biomacromolecules: past, present, and future

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NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers

26 October 2017

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A historical account of Hoogsteen base-pairs in duplex DNA.

26 October 2017

1 reference

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MTSA--a Matlab program to fit thermal shift data

26 October 2017

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Structure of human DNA polymerase iota and the mechanism of DNA synthesis

26 October 2017

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Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde

26 October 2017

1 reference

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Sequence-specific B-DNA flexibility modulates Z-DNA formation

26 October 2017

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Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs

26 October 2017

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The role of DNA shape in protein-DNA recognition

26 October 2017

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Structure and mechanism for DNA lesion recognition

26 October 2017

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Phi-value analysis of a three-state protein folding pathway by NMR relaxation dispersion spectroscopy

26 October 2017

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A suite of Mathematica notebooks for the analysis of protein main chain 15N NMR relaxation data

26 October 2017

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Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases

26 October 2017

1 reference

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A nuclear magnetic resonance investigation of the energetics of basepair opening pathways in DNA

26 October 2017

1 reference

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Biochemical evidence for the requirement of Hoogsteen base pairing for replication by human DNA polymerase iota

26 October 2017

1 reference

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Predicting indirect readout effects in protein-DNA interactions

26 October 2017

1 reference

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A Hoogsteen base pair embedded in undistorted B-DNA.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537320

Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537320

TATA element recognition by the TATA box-binding protein has been conserved throughout evolution

26 October 2017

1 reference

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Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537320

Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

26 October 2017

1 reference

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

26 October 2017

1 reference

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NMR of enzymatically synthesized uniformly 13C15N-labeled DNA oligonucleotides

26 October 2017

1 reference

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A comparison of the structure of echinomycin and triostin A complexed to a DNA fragment

26 October 2017

1 reference

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Unstable Hoogsteen base pairs adjacent to echinomycin binding sites within a DNA duplex

26 October 2017

1 reference

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The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding

26 October 2017

1 reference

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Characterizing the protonation state of cytosine in transient G·C Hoogsteen base pairs in duplex DNA.

26 October 2017

1 reference

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Transient Hoogsteen base pairs in canonical duplex DNA.

29 May 2018

1 reference

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Active site sharing and subterminal hairpin recognition in a new class of DNA transposases

29 May 2018

1 reference

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Probing transient Hoogsteen hydrogen bonds in canonical duplex DNA using NMR relaxation dispersion and single-atom substitution

29 May 2018

1 reference

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Biophysics: Flipping Watson and Crick.

17 August 2018

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Effect of 1-methyladenine on double-helical DNA structures.

17 August 2018

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Theoretical study of the Hoogsteen-Watson-Crick junctions in DNA.

17 August 2018

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DNA polymerases: Hoogsteen base-pairing in DNA replication?

17 August 2018

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R(1rho) relaxation for two-site chemical exchange: general approximations and some exact solutions.

17 August 2018

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Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing

17 August 2018

1 reference

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Theoretical study of a new DNA structure: the antiparallel Hoogsteen duplex.

17 August 2018

1 reference

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A new look at the statistical model identification

17 August 2018

1 reference

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X-ray and NMR Studies of the DNA Oligomer d(ATATAT): Hoogsteen Base Pairing in Duplex DNA†

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5786

Extending the Range of Microsecond-to-Millisecond Chemical Exchange Detected in Labeled and Unlabeled Nucleic Acids by Selective Carbon R1ρNMR Spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5786

A single mode of DNA base-pair opening drives imino proton exchange

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5786

Optical melting of 128 octamer DNA duplexes. Effects of base pair location and nearest neighbors on thermal stability

21 January 2018

1 reference

12 December 2020

Improved nearest-neighbor parameters for predicting DNA duplex stability

1 reference

12 December 2020

A novel DNA duplex. A parallel-stranded DNA helix with Hoogsteen base pairing

1 reference

12 December 2020

The molecular structure of a DNA-triostin A complex

1 reference

12 December 2020

Excitation of selected proton signals in NMR of isotopically labeled macromolecules

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCOMMS5786

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25185517%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25185517%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

PubMed publication ID

25185517

1 reference