(Q42264248)

19 October 2017

New Zealand Passerines Help Clarify the Diversification of Major Songbird Lineages during the Oligocene (English)

1 reference

19 October 2017

0 references

1 reference

Ryan England

2

0 references

Bennet J McComish

Bennet J McComish

6

0 references

Gillian C. Gibb

Gillian C Gibb

1

0 references

Alan J. Cooper

Alan Cooper

7

0 references

B.L. Taylor Smith

Briar L Taylor Smith

5

0 references

author name string

Gerrit Hartig

3

1 reference

19 October 2017

Patricia A Trish McLenachan

4

1 reference

19 October 2017

David Penny

8

1 reference

19 October 2017

15 October 2015

1 reference

Genome Biology and Evolution

19 October 2017

1 reference

19 October 2017

7

1 reference

19 October 2017

11

1 reference

19 October 2017

2983-2995

1 reference

Whole-genome analyses resolve early branches in the tree of life of modern birds

19 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Mitogenomic data resolve basal relationships among passeriform and passeridan birds

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Niche filling slows the diversification of Himalayan songbirds

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Dating the diversification of the major lineages of Passeriformes (Aves).

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Resolving deep lineage divergences in core corvoid passerine birds supports a proto-Papuan island origin

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Identifying localized biases in large datasets: a case study using the avian tree of life

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Rapid characterization of mitochondrial genome rearrangements in Australian songbirds using next-generation sequencing technology.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

The global diversity of birds in space and time

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Reconstructing past species assemblages reveals the changing patterns and drivers of extinction through time

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Ecological limits on diversification of the Himalayan core Corvoidea

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Bayesian phylogenetics with BEAUti and the BEAST 1.7

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Phylogeny and Biogeography of the Core Babblers (Aves: Timaliidae)

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Best practices for justifying fossil calibrations

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Molecular and morphological evidences place the extinct New Zealand endemic Turnagra capensis in the Oriolidae

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

The New Zealand Thrush: an extinct oriole

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae)

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Major global radiation of corvoid birds originated in the proto-Papuan archipelago

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Index-free de novo assembly and deconvolution of mixed mitochondrial genomes.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

ABySS: a parallel assembler for short read sequence data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Convergent evolution of Hawaiian and Australo-Pacific honeyeaters from distant songbird ancestors

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Toward resolving deep neoaves phylogeny: data, signal enhancement, and priors

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Phylogeny of the avian genus Pitohui and the evolution of toxicity in birds

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

A rapid bootstrap algorithm for the RAxML Web servers

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Phylogenetic relationships within Passerida (Aves: Passeriformes): a review and a new molecular phylogeny based on three nuclear intron markers

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

A phylogenomic study of birds reveals their evolutionary history

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Explosive avian radiations and multi-directional dispersal across Wallacea: evidence from the Campephagidae and other Crown Corvida (Aves).

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Bird evolution: testing the Metaves clade with six new mitochondrial genomes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Polyphyletic origin of toxic Pitohui birds suggests widespread occurrence of toxicity in corvoid birds

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

The relationships and origins of the New Zealand wattlebirds (Passeriformes, Callaeatidae) from DNA sequence analyses

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Diversification of Neoaves: integration of molecular sequence data and fossils

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Paleontological evidence to date the tree of life

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Resolving the root of the avian mitogenomic tree by breaking up long branches

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Systematic affinities of two enigmatic New Zealand passerines of high conservation priority, the hihi or stitchbird Notiomystis cincta and the kokako Callaeas cinerea

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

The Paleogene fossil record of birds in Europe.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Automated generation of heuristics for biological sequence comparison

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Definitive fossil evidence for the extant avian radiation in the Cretaceous

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Parallel radiations in the primary clades of birds

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Phylogeny and diversification of the largest avian radiation

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Sapayoa aenigma: a New World representative of 'Old World suboscines'

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

MRBAYES: Bayesian inference of phylogenetic trees

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

What is not a bird of paradise? Molecular and morphological evidence places Macgregoria in the Meliphagidae and the Cnemophilinae near the base of the corvoid tree

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Were bowerbirds part of the New Zealand fauna?

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Beyond phylogeny: pelecaniform and ciconiiform birds, and long-term niche stability.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5635589

Phylogenetic relationships of the genus Mohoua, endemic hosts of New Zealand’s obligate brood parasitic Long-tailed Cuckoo (Eudynamys taitensis)

17 August 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Fossil Songbirds (Passeriformes) from the Early Eocene of Australia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

A new endemic family of New Zealand passerine birds: adding heat to a biodiversity hotspot

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

PARALLEL RADIATIONS IN THE PRIMARY CLADES OF BIRDS

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Analyses of mitochondrial DNA nest ratite birds within the Neognathae: supporting a neotenous origin of ratite morphological characters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

The age of the crown group of passerine birds and its evolutionary significance – molecular calibrations versus the fossil record

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Recombination in Glomus intraradices, a supposed ancient asexual arbuscular mycorrhizal fungus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

A Late Cretaceous and Cenozoic reconstruction of the Southwest Pacific region: Tectonics controlled by subduction and slab rollback processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Macroevolutionary patterns in the diversification of parrots: effects of climate change, geological events and key innovations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Molecular phylogeny of songbirds (Aves: Passeriformes) and the relative utility of common nuclear marker loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Vicars, tramps and assembly of the New Zealand avifauna: a review of molecular phylogenetic evidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Miocene waterfowl and other birds from central Otago, New Zealand

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

A Large Fruit Pigeon (Columbidae) from the Early Miocene of New Zealand

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Biogeographical and phylogenetic implications of an early Miocene wren (Aves: Passeriformes: Acanthisittidae) from New Zealand

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

An early Miocene diversity of parrots (Aves, Strigopidae, Nestorinae) from New Zealand

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

The world's oldest songbird

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV196

Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26475316

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVV196

1 reference

19 October 2017

1 reference

19 October 2017

PubMed publication ID

26475316

1 reference