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TT2NE: a novel algorithm to predict RNA secondary structures with pseudoknots
scientific article published on 18 May 2011
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scholarly article
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stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
title
TT2NE: a novel algorithm to predict RNA secondary structures with pseudoknots
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
author
Henri Orland
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
author name string
Michaël Bon
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
publication date
18 May 2011
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
volume
39
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
issue
14
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
page(s)
e93
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
copyright license
Creative Commons Attribution-NonCommercial 3.0 Unported
start time
5 October 2016
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
ProbKnot: fast prediction of RNA secondary structure including pseudoknots
1 reference
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PubMed Central
reference URL
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26 October 2017
Most mammalian mRNAs are conserved targets of microRNAs
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PubMed Central
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26 October 2017
HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
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26 October 2017
Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
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26 October 2017
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
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26 October 2017
Mfold web server for nucleic acid folding and hybridization prediction
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26 October 2017
RNA pseudoknot prediction in energy-based models
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
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26 October 2017
How RNA folds
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
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26 October 2017
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
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26 October 2017
A dynamic programming algorithm for RNA structure prediction including pseudoknots
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
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26 October 2017
The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
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26 October 2017
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
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26 October 2017
Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus
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26 October 2017
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
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26 October 2017
Topology links RNA secondary structure with global conformation, dynamics, and adaptation
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17 August 2018
Topological classification of RNA structures
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PubMed Central
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17 August 2018
Rapid ab initio prediction of RNA pseudoknots via graph tree decomposition.
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17 August 2018
Predicting RNA secondary structures with pseudoknots by MCMC sampling.
1 reference
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PubMed Central
reference URL
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17 August 2018
Steepest descent calculation of RNA pseudoknots.
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17 August 2018
An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
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17 August 2018
A partition function algorithm for nucleic acid secondary structure including pseudoknots
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152363
retrieved
17 August 2018
RNA pseudoknots: translational frameshifting and readthrough on viral RNAs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21593129
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Enumeration of RNA structures by matrix models
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21593129
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/GKR240
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
arXiv ID
1010.4490
1 reference
stated in
Unpaywall
PMC publication ID
3152363
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
PubMed publication ID
21593129
1 reference
stated in
Europe PubMed Central
PMC publication ID
3152363
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21593129%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
ResearchGate publication ID
51147157
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