(Q42547592)

2 November 2017

Crux: rapid open source protein tandem mass spectrometry analysis (English)

1 reference

2 November 2017

0 references

9

1 reference

2 November 2017

10

Jimmy K Eng

1 reference

2 November 2017

12

William Stafford Noble

1 reference

2 November 2017

11

Michael J MacCoss

1 reference

2 November 2017

Sean McIlwain

1

1 reference

2 November 2017

Kaipo Tamura

2

1 reference

2 November 2017

Attila Kertesz-Farkas

3

1 reference

2 November 2017

Charles E Grant

4

1 reference

2 November 2017

Benjamin Diament

5

1 reference

2 November 2017

Barbara Frewen

6

1 reference

2 November 2017

J Jeffry Howbert

7

1 reference

2 November 2017

Michael R Hoopmann

8

1 reference

2 November 2017

9 September 2014

1 reference

Journal of Proteome Research

2 November 2017

1 reference

2 November 2017

13

1 reference

2 November 2017

4488-4491

1 reference

2 November 2017

10

1 reference

Computing exact p-values for a cross-correlation shotgun proteomics score function

2 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Global analysis of protein expression and phosphorylation of three stages of Plasmodium falciparum intraerythrocytic development.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Variation and genetic control of protein abundance in humans

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Estimating relative abundances of proteins from shotgun proteomics data

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Comet: an open-source MS/MS sequence database search tool

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

A cross-platform toolkit for mass spectrometry and proteomics

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

A mass spectrometry proteomics data management platform

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Identifying proteomic LC-MS/MS data sets with Bumbershoot and IDPicker

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Direct maximization of protein identifications from tandem mass spectra

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Faster SEQUEST searching for peptide identification from tandem mass spectra

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Efficient marginalization to compute protein posterior probabilities from shotgun mass spectrometry data

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

A guided tour of the Trans-Proteomic Pipeline

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Comparison of database search strategies for high precursor mass accuracy MS/MS data

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

OpenMS - an open-source software framework for mass spectrometry

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Open source system for analyzing, validating, and storing protein identification data

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

CPFP: a central proteomics facilities pipeline

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Rapid and accurate peptide identification from tandem mass spectra

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4184452

16 August 2018

Identifiers

DOI

10.1021/PR500741Y

1 reference

2 November 2017

1 reference

2 November 2017

1 reference