(Q42634194)

English

Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline

scientific article published on 19 December 2013

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scholarly article

1 reference

Europe PubMed Central

4 November 2017

Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline (English)

1 reference

Europe PubMed Central

4 November 2017

0 references

Ruedi Aebersold

3

object named as

Ruedi Aebersold

1 reference

Europe PubMed Central

4 November 2017

Alexander Leitner

object named as

Alexander Leitner

1

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author name string

Thomas Walzthoeni

2

1 reference

Europe PubMed Central

4 November 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

19 December 2013

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Europe PubMed Central

4 November 2017

Nature Protocols

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Europe PubMed Central

4 November 2017

9

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Europe PubMed Central

4 November 2017

120-137

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Europe PubMed Central

4 November 2017

1

1 reference

Europe PubMed Central

4 November 2017

describes a project that uses

liquid chromatography–mass spectrometry

1 reference

based on heuristic

inferred from title

https://scigraph.springernature.com/pub.10.1038/nprot.2013.168

0 references

Mass spectrometry: come of age for structural and dynamical biology.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Joining forces: integrating proteomics and cross-linking with the mass spectrometry of intact complexes

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Two decades of studying non-covalent biomolecular assemblies by means of electrospray ionization mass spectrometry.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Mass spectrometry supported determination of protein complex structure

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Crosslinking combined with mass spectrometry for structural proteomics

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Hydrogen exchange mass spectrometry for studying protein structure and dynamics

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

A new cross-linking strategy: protein interaction reporter (PIR) technology for protein-protein interaction studies

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

An isotopically coded CID-cleavable biotinylated cross-linker for structural proteomics

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Cross-linking measurements of in vivo protein complex topologies

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Doxorubicin-induced thymus senescence

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

ICC-CLASS: isotopically-coded cleavable crosslinking analysis software suite

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

CrossWork: software-assisted identification of cross-linked peptides.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

StavroX--a software for analyzing crosslinked products in protein interaction studies

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Identification of cross-linked peptides from complex samples.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Biochemistry. Integrative structural biology

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

A method for integrative structure determination of protein-protein complexes

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Identification of cross-linked peptides from large sequence databases

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

False discovery rate estimation for cross-linked peptides identified by mass spectrometry.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Molecular basis of Rrn3-regulated RNA polymerase I initiation and cell growth

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

RNA polymerase III subunit architecture and implications for open promoter complex formation

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

The molecular architecture of the eukaryotic chaperonin TRiC/CCT

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Molecular architecture of human polycomb repressive complex 2

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Structure and subunit topology of the INO80 chromatin remodeler and its nucleosome complex.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Molecular architecture of the ATP-dependent chromatin-remodeling complex SWR1.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modeling

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

The Crystal Structures of the Eukaryotic Chaperonin CCT Reveal Its Functional Partitioning

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Topology and organization of the Salmonella typhimurium type III secretion needle complex components

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

The structural basis for autonomous dimerization of the pre-T-cell antigen receptor

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Structural analysis of a prokaryotic ribosome using a novel amidinating cross-linker and mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Protein interfaces of the conserved Nup84 complex from Chaetomium thermophilum shown by crosslinking mass spectrometry and electron microscopy

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Insights into EB1 structure and the role of its C-terminal domain for discriminating microtubule tips from the lattice

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Structural analysis of vascular endothelial growth factor receptor-2/ligand complexes by small-angle X-ray solution scattering.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

In vivo protein interaction network identified with a novel real-time cross-linked peptide identification strategy

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Protein interactions, post-translational modifications and topologies in human cells

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

A cross-platform toolkit for mass spectrometry and proteomics

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.168

31 March 2020

Improved strategies for rapid identification of chemically cross-linked peptides using protein interaction reporter technology

1 reference

https://pubmed.ncbi.nlm.nih.gov/24356771

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mass spectrometry combined with oxidative labeling for exploring protein structure and folding.

1 reference

https://pubmed.ncbi.nlm.nih.gov/24356771

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1038/NPROT.2013.168

1 reference

Europe PubMed Central

4 November 2017

1 reference

Europe PubMed Central

4 November 2017

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