(Q42652026)

English

The low temperature-responsive, Solanum CBF1 genes maintain high identity in their upstream regions in a genomic environment undergoing gene duplications, deletions, and rearrangements

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

The low temperature-responsive, Solanum CBF1 genes maintain high identity in their upstream regions in a genomic environment undergoing gene duplications, deletions, and rearrangements (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

gene duplication

1 reference

based on heuristic

inferred from title

author name string

Joyce C Pennycooke

1

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

Hongmei Cheng

2

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

Stephanie M Roberts

3

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

Qiaofeng Yang

4

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

Seung Y Rhee

5

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

Eric J Stockinger

6

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

publication date

16 April 2008

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

number of pages

15

1 reference

based on heuristic

inferred from page(s)

Plant Molecular Biology

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Europe PubMed Central

PubMed publication ID

4 November 2017

67

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Europe PubMed Central

PubMed publication ID

4 November 2017

5

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Europe PubMed Central

PubMed publication ID

4 November 2017

483-497

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Europe PubMed Central

PubMed publication ID

4 November 2017

https://scigraph.springernature.com/pub.10.1007/s11103-008-9333-5

0 references

PER1 is required for GPI-phospholipase A2 activity and involved in lipid remodeling of GPI-anchored proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

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Pto3 and Pto4: novel genes from Lycopersicon hirsutum var. glabratum that confer resistance to Pseudomonas syringae pv tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cold Induction of Arabidopsis CBF Genes Involves Multiple ICE (Inducer of CBF Expression) Promoter Elements and a Cold-Regulatory Circuit That Is Desensitized by Low Temperature

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Features of Arabidopsis genes and genome discovered using full-length cDNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Orchestrated transcription of key pathways in Arabidopsis by the circadian clock

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gibbs Recursive Sampler: finding transcription factor binding sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural, functional, and phylogenetic characterization of a large CBF gene family in barley

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characteristics of Cold Acclimation and Deacclimation in Tuber-bearing Solanum Species

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative genomic sequence and expression analyses of Medicago truncatula and alfalfa subspecies falcata COLD-ACCLIMATION-SPECIFIC genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PipMaker--a web server for aligning two genomic DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extensive concerted evolution of rice paralogs and the road to regaining independence

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional annotation of a full-length Arabidopsis cDNA collection

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The inheritance of chilling tolerance in tomato (Lycopersicon spp.).

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor 1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Components of the Arabidopsis C-repeat/dehydration-responsive element binding factor cold-response pathway are conserved in Brassica napus and other plant species.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary dynamics of plant duplicate genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene Duplication and Gene Conversion in the Caenorhabditis elegans Genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEME: discovering and analyzing DNA and protein sequence motifs

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MatInspector and beyond: promoter analysis based on transcription factor binding sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Freezing-sensitive tomato has a functional CBF cold response pathway, but a CBF regulon that differs from that of freezing-tolerant Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple hydrophobic motifs in Arabidopsis CBF1 COOH-terminus provide functional redundancy in trans-activation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

1 reference

https://pubmed.ncbi.nlm.nih.gov/18415686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S11103-008-9333-5

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

Dimensions Publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 November 2017

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