(Q42660080)

4 November 2017

Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification (English)

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4 November 2017

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7

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4 November 2017

8

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4 November 2017

Sebastian Proost

2

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author name string

Dries Vekemans

1

1 reference

4 November 2017

Kevin Vanneste

3

1 reference

4 November 2017

Heleen Coenen

4

1 reference

4 November 2017

Tom Viaene

5

1 reference

4 November 2017

Philip Ruelens

6

1 reference

4 November 2017

Koen Geuten

9

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4 November 2017

language of work or name

1 reference

20 July 2012

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Molecular Biology and Evolution

4 November 2017

1 reference

4 November 2017

29

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4 November 2017

12

1 reference

4 November 2017

3793-3806

1 reference

Polyploidy and genome evolution in plants

4 November 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

De novo genome assembly: what every biologist should know

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

VIGS--genomics goes functional.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Evolutionary developmental biology and genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

NOTUNG: a program for dating gene duplications and optimizing gene family trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The TIGR Plant Transcript Assemblies database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. What is the role of genome duplication in the evolution of complexity and diversity?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Widespread genome duplications throughout the history of flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Genome duplication and the origin of angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Are petals sterile stamens or bracts? The origin and evolution of petals in the core eudicots

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Genome-wide analysis of MIKCC-type MADS box genes in grapevine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Transcriptional regulators and the evolution of plant form.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Functional analyses of genetic pathways controlling petal specification in poppy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

An efficient algorithm for large-scale detection of protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Calcareous nannoplankton response to surface-water acidification around Oceanic Anoxic Event 1a.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Hidden variability of floral homeotic B genes in Solanaceae provides a molecular basis for the evolution of novel functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

FrameDP: sensitive peptide detection on noisy matured sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

All duplicates are not equal: the difference between small-scale and genome duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Virus-induced gene silencing is an effective tool for assaying gene function in the basal eudicot species Papaver somniferum (opium poppy).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

More is better: the uses of developmental genetic data to reconstruct perianth evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Flower development and evolution: gene duplication, diversification and redeployment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

A genome triplication associated with early diversification of the core eudicots

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Ancestral polyploidy in seed plants and angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

MIKC-type MADS-domain proteins: structural modularity, protein interactions and network evolution in land plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Elaboration of B gene function to include the identity of novel floral organs in the lower eudicot Aquilegia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

A simplified explanation for the frameshift mutation that created a novel C-terminal motif in the APETALA3 gene lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Gene duplication and loss in a MADS box gene transcription factor circuit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

De novo assembly of human genomes with massively parallel short read sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Epigenetic phenomena and the evolution of plant allopolyploids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Interactions among proteins of floral MADS-box genes in basal eudicots: implications for evolution of the regulatory network for flower development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Reciprocal gene loss following experimental whole-genome duplication causes reproductive isolation in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Modeling gene and genome duplications in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Angiosperm diversification through time

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Recently formed polyploid plants diversify at lower rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Mechanism of gallic acid biosynthesis in bacteria (Escherichia coli) and walnut (Juglans regia)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Correlation of oxidative transformations of hydrolyzable tannins and plant evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The evolutionary consequences of polyploidy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Polyploid Incidence and Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

MODELTEST: testing the model of DNA substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

PLAZA: a comparative genomics resource to study gene and genome evolution in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Polyploidy and ecological adaptation in wild yarrow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

PATHWAYS, MECHANISMS, AND RATES OF POLYPLOID FORMATION IN FLOWERING PLANTS

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The tomato genome sequence provides insights into fleshy fruit evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Mining EST databases to resolve evolutionary events in major crop species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Estimating the Dimension of a Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The hidden duplication past of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Polyploidy and angiosperm diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Gunnerales are sister to other core eudicots: implications for the evolution of pentamery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Angiosperm phylogeny: 17 genes, 640 taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The role of genetic and genomic attributes in the success of polyploids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Genome duplication, a trait shared by 22000 species of ray-finned fish

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Molecular mechanisms underlying origin and diversification of the angiosperm flower

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Dissecting plant genomes with the PLAZA comparative genomics platform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The evolutionary significance of ancient genome duplications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Computational approaches to unveiling ancient genome duplications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The genome of the domesticated apple (Malus × domestica Borkh.)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Evidence of interaction network evolution by whole-genome duplications: a case study in MADS-box proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Expression divergence of the AGL6 MADS domain transcription factor lineage after a core eudicot duplication suggests functional diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Molecular evidence for an ancient duplication of the entire yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The frequency of polyploid speciation in vascular plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Genome sequence and analysis of the tuber crop potato

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

Conservation and divergence in the AGAMOUS subfamily of MADS-box genes: evidence of independent sub- and neofunctionalization events

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

A volcanically induced climate warming and floral change preceded the onset of OAE1a (Early Cretaceous)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS183

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSS183

1 reference

4 November 2017

1 reference