(Q42672455)

English

Genome sequencing of 39 Akkermansia muciniphila isolates reveals its population structure, genomic and functional diverisity, and global distribution in mammalian gut microbiotas

scientific article published on 18 October 2017

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

Genome sequencing of 39 Akkermansia muciniphila isolates reveals its population structure, genomic and functional diverisity, and global distribution in mammalian gut microbiotas (English)

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

whole genome sequencing

1 reference

based on heuristic

inferred from title

population structure

1 reference

based on heuristic

inferred from title

Akkermansia muciniphila

object named as

Akkermansia muciniphila

1 reference

based on heuristic

inferred from title

8

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29047329%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

13

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PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29047329%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

Xianfeng Guo

1

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4 June 2020

Shenghui Li

2

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4 June 2020

Jiachun Zhang

3

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4 June 2020

Feifan Wu

4

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4 June 2020

Xiangchun Li

5

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4 June 2020

Dan Wu

6

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4 June 2020

Min Zhang

7

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4 June 2020

Zhuye Jie

9

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4 June 2020

Qiulong Yan

10

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4 June 2020

Peng Li

11

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4 June 2020

Jiangfeng Yi

12

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4 June 2020

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publication date

18 October 2017

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4 November 2017

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4 June 2020

18

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4 June 2020

1

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4 June 2020

800

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4 June 2020

https://scigraph.springernature.com/pub.10.1186/s12864-017-4195-3

0 references

Metformin Is Associated With Higher Relative Abundance of Mucin-Degrading Akkermansia muciniphila and Several Short-Chain Fatty Acid-Producing Microbiota in the Gut.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

In vitro colonisation of the distal colon by Akkermansia muciniphila is largely mucin and pH dependent.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Akkermansia muciniphila: a novel functional microbe with probiotic properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Akkermansia Muciniphila Protects Against Atherosclerosis by Preventing Metabolic Endotoxemia-Induced Inflammation in Apoe-/- Mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Population-level analysis of gut microbiome variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

1 reference

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27 May 2018

Akkermansia muciniphila and its role in regulating host functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Different subtype strains of Akkermansia muciniphila abundantly colonize in southern China

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Akkermansia muciniphila inversely correlates with the onset of inflammation, altered adipose tissue metabolism and metabolic disorders during obesity in mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

A catalog of the mouse gut metagenome

1 reference

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27 May 2018

Roary: rapid large-scale prokaryote pan genome analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Akkermansia muciniphila Adheres to Enterocytes and Strengthens the Integrity of the Epithelial Cell Layer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

An integrated catalog of reference genes in the human gut microbiome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Prokka: rapid prokaryotic genome annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Data, information, knowledge and principle: back to metabolism in KEGG

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Richness of human gut microbiome correlates with metabolic markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Genomic variation landscape of the human gut microbiome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

GapFiller: a de novo assembly approach to fill the gap within paired reads

1 reference

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27 May 2018

MOCAT: a metagenomics assembly and gene prediction toolkit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

A metagenome-wide association study of gut microbiota in type 2 diabetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

A framework for human microbiome research

1 reference

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27 May 2018

Microbes inside--from diversity to function: the case of Akkermansia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

27 May 2018

Low relative abundances of the mucolytic bacterium Akkermansia muciniphila and Bifidobacterium spp. in feces of children with autism

1 reference

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27 May 2018

Evidence for a core gut microbiota in the zebrafish.

1 reference

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27 May 2018

The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes

1 reference

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Scaffolding pre-assembled contigs using SSPACE

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Aminoglycoside modifying enzymes

1 reference

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27 May 2018

Prodigal: prokaryotic gene recognition and translation initiation site identification

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Bacteria associated with immunoregulatory cells in mice

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Shifting the genomic gold standard for the prokaryotic species definition

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The Sequence Alignment/Map format and SAMtools

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Replication and conjugative mobilization of broad host-range IncQ plasmids

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Fast and accurate short read alignment with Burrows-Wheeler transform

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

1 reference

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Evolution of mammals and their gut microbes

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

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27 May 2018

The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648452

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RNAmmer: consistent and rapid annotation of ribosomal RNA genes

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A canonical FtsZ protein in Verrucomicrobium spinosum, a member of the Bacterial phylum Verrucomicrobia that also includes tubulin-producing Prosthecobacter species

1 reference

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1 reference

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1 reference

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27 May 2018

Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium.

1 reference

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1 reference

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1 reference

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12 December 2020

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Mucolytic Bacteria With Increased Prevalence in IBD Mucosa Augment In Vitro Utilization of Mucin by Other Bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/29047329

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12864-017-4195-3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29047329%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Dimensions Publication ID

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PMC publication ID

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29047329%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29047329%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

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