(Q42689212)

English

Structural and functional characterization of the human DNA repair helicase XPD by comparative molecular modeling and site-directed mutagenesis of the bacterial repair protein UvrB.

scientific article published on 27 November 2002

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scholarly article

1 reference

Europe PubMed Central

4 November 2017

Structural and functional characterization of the human DNA repair helicase XPD by comparative molecular modeling and site-directed mutagenesis of the bacterial repair protein UvrB. (English)

1 reference

Europe PubMed Central

4 November 2017

Rachelle Bienstock

1

1 reference

Europe PubMed Central

4 November 2017

author name string

Milan Skorvaga

2

1 reference

Europe PubMed Central

4 November 2017

Bhaskar S Mandavilli

3

1 reference

Europe PubMed Central

4 November 2017

Bennett Van Houten

4

1 reference

Europe PubMed Central

4 November 2017

language of work or name

0 references

publication date

27 November 2002

1 reference

Europe PubMed Central

4 November 2017

Journal of Biological Chemistry

1 reference

Europe PubMed Central

4 November 2017

278

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Europe PubMed Central

4 November 2017

7

1 reference

Europe PubMed Central

4 November 2017

5309-5316

1 reference

Europe PubMed Central

4 November 2017

A phylogenomic study of DNA repair genes, proteins, and processes

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21 January 2018

A cut above: discovery of an alternative excision repair pathway in bacteria

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21 January 2018

Analysis of mutations in the XPD gene in Italian patients with trichothiodystrophy: site of mutation correlates with repair deficiency, but gene dosage appears to determine clinical severity

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21 January 2018

How nucleotide excision repair protects against cancer

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Genome maintenance mechanisms for preventing cancer

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The xeroderma pigmentosum group D (XPD) gene: one gene, two functions, three diseases

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Helicase motifs: the engine that powers DNA unwinding

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Nucleotide excision repair "a legacy of creativity".

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DNA helicases in inherited human disorders

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DNA helicases, genomic instability, and human genetic disease

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Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP

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Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases

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DNA binding mediates conformational changes and metal ion coordination in the active site of PcrA helicase

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Crystal structure of a DExx box DNA helicase

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Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

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Structure of the hepatitis C virus RNA helicase domain

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Crystal structure of the DNA nucleotide excision repair enzyme UvrB from Thermus thermophilus

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Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair

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Crystal structure of UvrB, a DNA helicase adapted for nucleotide excision repair

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The nucleotide excision repair protein UvrB, a helicase-like enzyme with a catch.

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A tour of structural genomics.

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A genomic perspective on protein families

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Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes

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Endonuclease (R) subunits of type-I and type-III restriction-modification enzymes contain a helicase-like domain

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An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences

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Matching sequences under deletion-insertion constraints

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21 January 2018

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

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The PSIPRED protein structure prediction server

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Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM.

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21 January 2018

Enhanced genome annotation using structural profiles in the program 3D-PSSM

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21 January 2018

Crystal structure of Escherichia coli UvrB C-terminal domain, and a model for UvrB-uvrC interaction

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21 January 2018

Sausage: protein threading with flexible force fields.

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21 January 2018

Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading

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FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

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Protein secondary structure prediction based on position-specific scoring matrices

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Prediction of protein secondary structure at better than 70% accuracy

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21 January 2018

Exploiting the past and the future in protein secondary structure prediction

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Cascaded multiple classifiers for secondary structure prediction

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Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence.

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21 January 2018

Mutations in the XPD helicase gene result in XP and TTD phenotypes, preventing interaction between XPD and the p44 subunit of TFIIH

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p44/SSL1, the regulatory subunit of the XPD/RAD3 helicase, plays a crucial role in the transcriptional activity of TFIIH.

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Clue to damage recognition by UvrB: residues in the beta-hairpin structure prevent binding to non-damaged DNA.

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Trichothiodystrophy, a transcription syndrome

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Xeroderma pigmentosum and trichothiodystrophy are associated with different mutations in the XPD (ERCC2) repair/transcription gene.

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Crystal structure of the ATPase domain of translation initiation factor 4A from Saccharomyces cerevisiae--the prototype of the DEAD box protein family

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Helicase structure and mechanism

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Mutations in the Escherichia coli UvrB ATPase motif compromise excision repair capacity

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Molecular anatomy of the human excision nuclease assembled at sites of DNA damage

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Homodinuclear (Pt,Pt) and heterodinuclear (Ru,Pt) metal compounds as DNA-protein cross-linking agents: potential suicide DNA lesions

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Helicases: amino acid sequence comparisons and structure-function relationships

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Unraveling the role of helicases in transcription

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The β-Hairpin Motif of UvrB Is Essential for DNA Binding, Damage Processing, and UvrC-mediated Incisions

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NMR assignments and secondary structure of the UvrC binding domain of UvrB

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Linear programming optimization and a double statistical filter for protein threading protocols

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Identifiers

10.1074/JBC.M210159200

1 reference

Europe PubMed Central

4 November 2017

1 reference

Europe PubMed Central

4 November 2017

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