(Q42778015)

9 January 2018

title

Linnorm: improved statistical analysis for single cell RNA-seq expression data (English)

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9 January 2018

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Shun H Yip

1

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9 January 2018

Panwen Wang

2

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9 January 2018

Jean-Pierre A Kocher

3

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9 January 2018

Pak Chung Sham

4

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9 January 2018

Junwen Wang

5

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9 January 2018

language of work or name

English

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publication date

18 September 2017

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9 January 2018

published in

Nucleic Acids Research

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9 January 2018

volume

45

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9 January 2018

issue

22

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9 January 2018

page(s)

e179

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9 January 2018

Creative Commons Attribution-NonCommercial 4.0 International

copyright license

start time

18 September 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/5727406

based on heuristic

inferred from PubMed Central ID database lookup

cites work

SCnorm: robust normalization of single-cell RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Power analysis of single-cell RNA-sequencing experiments

27 May 2018

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Combining dependent P-values with an empirical adaptation of Brown's method

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Beyond comparisons of means: understanding changes in gene expression at the single-cell level

27 May 2018

1 reference

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Design and computational analysis of single-cell RNA-sequencing experiments

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Near-optimal probabilistic RNA-seq quantification

27 May 2018

1 reference

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27 May 2018

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Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

27 May 2018

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Spatial reconstruction of single-cell gene expression data

27 May 2018

1 reference

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Computational and analytical challenges in single-cell transcriptomics

27 May 2018

1 reference

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limma powers differential expression analyses for RNA-sequencing and microarray studies

27 May 2018

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

27 May 2018

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A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

27 May 2018

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Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

27 May 2018

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Robustly detecting differential expression in RNA sequencing data using observation weights

27 May 2018

1 reference

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Trimmomatic: a flexible trimmer for Illumina sequence data

27 May 2018

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

27 May 2018

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voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

27 May 2018

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Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Accounting for technical noise in single-cell RNA-seq experiments.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization

27 May 2018

1 reference

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Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

A comparison of methods for differential expression analysis of RNA-seq data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Revisiting global gene expression analysis

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Transcriptional amplification in tumor cells with elevated c-Myc.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

A scaling normalization method for differential expression analysis of RNA-seq data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

mRNA-Seq whole-transcriptome analysis of a single cell

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

RNA-Seq: a revolutionary tool for transcriptomics

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

Differentiating human embryonic stem cells express a unique housekeeping gene signature.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5727406

16 August 2018

Identifiers

DOI

10.1093/NAR/GKX828

1 reference

9 January 2018

PMC publication ID

5727406

1 reference

9 January 2018

PubMed publication ID

28981748

1 reference

9 January 2018