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SCENIC: single-cell regulatory network inference and clustering.
scientific article published on 9 October 2017
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5937676
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1 April 2020
title
SCENIC: single-cell regulatory network inference and clustering
(English)
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5937676
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main subject
RNA sequencing
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Jean-Christophe Marine
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8
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5937676
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1 April 2020
Jasper Wouters
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13
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5937676
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1 April 2020
Sara Aibar
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1
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1 April 2020
Carmen Bravo González-Blas
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2
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1 April 2020
Thomas Moerman
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3
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1 April 2020
Hana Imrichova
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5
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Gert Hulselmans
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1 April 2020
Jan Aerts
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1 April 2020
Zeynep Kalender Atak
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12
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1 April 2020
Stein Aerts
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14
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1 April 2020
Vân Anh Huynh-Thu
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Vân Anh Huynh-Thu
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1 April 2020
Pierre Geurts
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9
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Pierre Geurts
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5937676
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1 April 2020
Florian Rambow
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7
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Florian Rambow
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5937676
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1 April 2020
author name string
Joost van den Oord
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11
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5937676
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publication date
9 October 2017
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5937676
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1 April 2020
published in
Nature Methods
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5937676
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28991892%20AND%20SRC:MED&resulttype=core&format=json
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1 April 2020
volume
14
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1 April 2020
issue
11
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1 April 2020
page(s)
1083-1086
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5937676
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cites work
SC3: consensus clustering of single-cell RNA-seq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
COSMIC: somatic cancer genetics at high-resolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Revealing the vectors of cellular identity with single-cell genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Nfib Promotes Metastasis through a Widespread Increase in Chromatin Accessibility
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Exploiting single-cell expression to characterize co-expression replicability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Single-cell genomics: coming of age
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
NFATc2 is an intrinsic regulator of melanoma dedifferentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Toward understanding and exploiting tumor heterogeneity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
A survey of human brain transcriptome diversity at the single cell level
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Decoding the regulatory network of early blood development from single-cell gene expression measurements.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Computational and analytical challenges in single-cell transcriptomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
limma powers differential expression analyses for RNA-sequencing and microarray studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
iRegulon: from a gene list to a gene regulatory network using large motif and track collections
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Quantitative single-cell RNA-seq with unique molecular identifiers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
ENNET: inferring large gene regulatory networks from expression data using gradient boosting
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
NFIB is a governor of epithelial-melanocyte stem cell behaviour in a shared niche
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Wisdom of crowds for robust gene network inference
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Inferring regulatory networks from expression data using tree-based methods
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
NFAT, immunity and cancer: a transcription factor comes of age
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Robust target gene discovery through transcriptome perturbations and genome-wide enhancer predictions in Drosophila uncovers a regulatory basis for sensory specification.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5937676
retrieved
30 June 2018
Greedy function approximation: A gradient boosting machine
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH.4463
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
MapReduce: Simplified Data Processing on Large Clusters
1 reference
stated in
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reference URL
https://api.crossref.org/works/10.1038%2FNMETH.4463
retrieved
7 January 2021
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10.1038/NMETH.4463
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PMC publication ID
5937676
1 reference
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Europe PubMed Central
PMC publication ID
5937676
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28991892%20AND%20SRC:MED&resulttype=core&format=json
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1 April 2020
PubMed publication ID
28991892
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