(Q42779814)

English

The C-terminal domain of the Escherichia coli RNA polymerase alpha subunit plays a role in the CI-dependent activation of the bacteriophage lambda pM promoter

scientific article published on 27 March 2007

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scholarly article

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Europe PubMed Central

PMC publication ID

7 November 2017

The C-terminal domain of the Escherichia coli RNA polymerase alpha subunit plays a role in the CI-dependent activation of the bacteriophage lambda pM promoter (English)

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

1 reference

based on heuristic

inferred from title

Escherichia coli

1 reference

based on heuristic

inferred from title

Grzegorz Węgrzyn

6

object named as

Grzegorz Wegrzyn

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

Anna Herman-Antosiewicz

3

object named as

Anna Herman-Antosiewicz

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

author name string

Barbara Kedzierska

1

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

Anna Szambowska

2

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

David J Lee

4

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

Stephen J W Busby

5

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

Mark S Thomas

7

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

language of work or name

0 references

publication date

27 March 2007

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

7 November 2017

35

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Europe PubMed Central

PMC publication ID

7 November 2017

7

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

2311-2320

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

A new look at bacteriophage lambda genetic networks

1 reference

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27 May 2018

Genetic switches during bacteriophage lambda development

1 reference

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27 May 2018

Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes

1 reference

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27 May 2018

Transcription activation at the Escherichia coli melAB promoter: interactions of MelR with the C-terminal domain of the RNA polymerase alpha subunit

1 reference

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27 May 2018

Role of the RNA polymerase alpha subunits in CII-dependent activation of the bacteriophage lambda pE promoter: identification of important residues and positioning of the alpha C-terminal domains.

1 reference

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27 May 2018

Structure of a ternary transcription activation complex

1 reference

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27 May 2018

Involvement of region 4 of the sigma70 subunit of RNA polymerase in transcriptional activation of the lux operon during quorum sensing

1 reference

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27 May 2018

Exploitation of a chemical nuclease to investigate the location and orientation of the Escherichia coli RNA polymerase alpha subunit C-terminal domains at simple promoters that are activated by cyclic AMP receptor protein.

1 reference

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27 May 2018

An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4.

1 reference

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27 May 2018

Region 4 of sigma as a target for transcription regulation

1 reference

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27 May 2018

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

1 reference

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27 May 2018

Determinants of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit important for transcription at class I cyclic AMP receptor protein-dependent promoters

1 reference

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27 May 2018

Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters

1 reference

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27 May 2018

Crystal structure of the lambda repressor C-terminal domain octamer

1 reference

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27 May 2018

Octamerization of lambda CI repressor is needed for effective repression of P(RM) and efficient switching from lysogeny

1 reference

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27 May 2018

Interactions of the XylS regulators with the C-terminal domain of the RNA polymerase alpha subunit influence the expression level from the cognate Pm promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Fine structure of E. coli RNA polymerase-promoter interactions: alpha subunit binding to the UP element minor groove

1 reference

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27 May 2018

Analysis of interactions between Activating Region 1 of Escherichia coli FNR protein and the C-terminal domain of the RNA polymerase alpha subunit: use of alanine scanning and suppression genetics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Crystal structure of the lambda repressor C-terminal domain provides a model for cooperative operator binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Roles of cyclic AMP receptor protein and the carboxyl-terminal domain of the alpha subunit in transcription activation of the Escherichia coli rhaBAD operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

The Escherichia coli RNA polymerase alpha subunit linker: length requirements for transcription activation at CRP-dependent promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

DNA sequence dependent and independent conformational changes in multipartite operator recognition by lambda-repressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Transcription activation by catabolite activator protein (CAP)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Involvement of the RNA polymerase alpha-subunit C-terminal domain in LuxR-dependent activation of the Vibrio fischeri luminescence genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Positive activation of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Transcription activation at Class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase alpha subunit.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Transcription activation at promoters carrying tandem DNA sites for the Escherichia coli cyclic AMP receptor protein: organisation of the RNA polymerase alpha subunits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Activation of P2 late transcription by P2 Ogr protein requires a discrete contact site on the C terminus of the alpha subunit of Escherichia coli RNA polymerase

1 reference

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27 May 2018

Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors

1 reference

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27 May 2018

Changing the mechanism of transcriptional activation by phage lambda repressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Upstream interactions at the lambda pRM promoter are sequence nonspecific and activate the promoter to a lesser extent than an introduced UP element of an rRNA promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both alpha and sigma70 subunits of Escherichia coli RNA polymerase

1 reference

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27 May 2018

Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element

1 reference

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27 May 2018

Protein-protein communication within the transcription apparatus

1 reference

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27 May 2018

Amino acid substitutions in the -35 recognition motif of sigma 70 that result in defects in phage lambda repressor-stimulated transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.

1 reference

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27 May 2018

Rapid RNA polymerase genetics: one-day, no-column preparation of reconstituted recombinant Escherichia coli RNA polymerase.

1 reference

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27 May 2018

Selectivity of the Escherichia coli RNA polymerase E sigma 38 for overlapping promoters and ability to support CRP activation

1 reference

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27 May 2018

Solution structure of the activator contact domain of the RNA polymerase alpha subunit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

The operator-binding domain of lambda repressor: structure and DNA recognition

1 reference

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27 May 2018

The effect of a lambda repressor mutation on the activation of transcription initiation from the lambda PRM promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Mutant lambda phage repressor with a specific defect in its positive control function

1 reference

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27 May 2018

Preparation of high titer lambda phage lysates

1 reference

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27 May 2018

E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Activation defects caused by mutations in Escherichia coli rpoA are promoter specific

1 reference

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27 May 2018

Supercoiling, integration host factor, and a dual promoter system, participate in the control of the bacteriophage lambda pL promoter

1 reference

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27 May 2018

Refined 1.8 A crystal structure of the lambda repressor-operator complex

1 reference

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27 May 2018

The lambda repressor contains two domains

1 reference

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27 May 2018

Interactions between DNA-bound repressors govern regulation by the λ phage repressor

1 reference

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27 May 2018

Allele specificity of the Escherichia coli dnaA gene function in the replication of plasmids derived from phage lambda.

1 reference

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Escherichia coli dnaA initiation function is required for replication of plasmids derived from coliphage lambda.

1 reference

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27 May 2018

A single glutamic acid residue plays a key role in the transcriptional activation function of lambda repressor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Escherichia coli rpoA mutation which impairs transcription of positively regulated systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Involvement of the Escherichia coli RNA polymerase alpha subunit in transcriptional activation by the bacteriophage lambda CI and CII proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

27 May 2018

Escherichia coli can tolerate insertions of up to 16 amino acids in the RNA polymerase alpha subunit inter-domain linker.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

16 August 2018

Transcription activation at the Escherichia coli melAB promoter: interactions of MelR with its DNA target site and with domain 4 of the RNA polymerase sigma subunit.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

16 August 2018

Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element- and activator-dependent transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

16 August 2018

A comparative three-dimensional model of the carboxy-terminal domain of the lambda repressor and its use to build intact repressor tetramer models bound to adjacent operator sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1874639

16 August 2018

Four dimers of lambda repressor bound to two suitably spaced pairs of lambda operators form octamers and DNA loops over large distances

1 reference

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Activation of prokaryotic transcription through arbitrary protein-protein contacts.

1 reference

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16 August 2018

Target of the transcriptional activation function of phage lambda cI protein

1 reference

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Location, structure, and function of the target of a transcriptional activator protein.

1 reference

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16 August 2018

DNA conformational changes associated with the cooperative binding of cI-repressor of bacteriophage lambda to OR.

1 reference

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16 August 2018

Gene regulation at the right operator (OR) of bacteriophage lambda. II. OR1, OR2, and OR3: their roles in mediating the effects of repressor and cro.

1 reference

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16 August 2018

Mechanism of activation of transcription initiation from the λPRM promoter

1 reference

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16 August 2018

Structural requirements for the interdomain linker of alpha subunit of Escherichia coli RNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389649

12 December 2020

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inferred from PubMed ID database lookup

Protein-protein and protein-DNA interactions of sigma70 region 4 involved in transcription activation by lambdacI

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389649

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based on heuristic

inferred from PubMed ID database lookup

Structure of the lambda complex at 2.5 A resolution: details of the repressor-operator interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389649

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction at a distance between λrepressers disrupts gene activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389649

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New mutations in the S cistron of bacteriophage lambda affecting host cell lysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389649

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based on heuristic

inferred from PubMed ID database lookup

Repressor structure and the mechanism of positive control

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389649

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA-binding determinants of the alpha subunit of RNA polymerase: novel DNA-binding domain architecture

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389649

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition of transcription starting from bacteriophage lambda pR promoter during the stringent response in Escherichia coli: implications for lambda DNA replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389649

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based on heuristic

inferred from PubMed ID database lookup

The C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase is required for efficient rho-dependent transcription termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389649

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKM123

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

7 November 2017

ResearchGate publication ID

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