(Q42853053)

English

Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs

scientific article published on 22 October 2013

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scholarly article

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Europe PubMed Central

PMC publication ID

8 November 2017

Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs (English)

1 reference

Europe PubMed Central

PMC publication ID

8 November 2017

DNA methylation

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1 reference

based on heuristic

inferred from title

2

1 reference

Europe PubMed Central

PMC publication ID

8 November 2017

Marcos J Araúzo-Bravo

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Marcos J Araúzo-Bravo

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author name string

Phuc-Loi Luu

1

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Europe PubMed Central

PMC publication ID

8 November 2017

publication date

22 October 2013

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Europe PubMed Central

PMC publication ID

8 November 2017

Genome Research

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Europe PubMed Central

PMC publication ID

8 November 2017

23

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Europe PubMed Central

PMC publication ID

8 November 2017

12

1 reference

Europe PubMed Central

PMC publication ID

8 November 2017

2013-2029

1 reference

Europe PubMed Central

PMC publication ID

8 November 2017

Comprehensive human transcription factor binding site map for combinatory binding motifs discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells

1 reference

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27 May 2018

CpG islands and the regulation of transcription

1 reference

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27 May 2018

A user's guide to the encyclopedia of DNA elements (ENCODE)

1 reference

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27 May 2018

Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation

1 reference

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27 May 2018

QDMR: a quantitative method for identification of differentially methylated regions by entropy

1 reference

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27 May 2018

Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines

1 reference

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27 May 2018

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

1 reference

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The Polycomb complex PRC2 and its mark in life

1 reference

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27 May 2018

A unique chromatin signature uncovers early developmental enhancers in humans

1 reference

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27 May 2018

Histone H3K27ac separates active from poised enhancers and predicts developmental state

1 reference

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27 May 2018

Analysis of human and mouse reprogramming of somatic cells to induced pluripotent stem cells. What is in the plate?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Active DNA demethylation: many roads lead to Rome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Epigenetic memory in induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Relationship between nucleosome positioning and DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

A model for genetic and epigenetic regulatory networks identifies rare pathways for transcription factor induced pluripotency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Dynamic changes in the human methylome during differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Human DNA methylomes at base resolution show widespread epigenomic differences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Direct reprogramming of human neural stem cells by OCT4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Epigenetic hierarchy governing Nestin expression

1 reference

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27 May 2018

Genetics and epigenetics: stability and plasticity during cellular differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

1 reference

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Effect of cra gene knockout together with edd and iclR genes knockout on the metabolism in Escherichia coli

1 reference

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27 May 2018

Pluripotent stem cells induced from adult neural stem cells by reprogramming with two factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Daxx represses RelB target promoters via DNA methyltransferase recruitment and DNA hypermethylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Induced pluripotent stem cell lines derived from human somatic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Prediction of transcription factor binding sites using genetical genomics methods

1 reference

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27 May 2018

The landscape of histone modifications across 1% of the human genome in five human cell lines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

27 May 2018

Generation of germline-competent induced pluripotent stem cells

1 reference

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Using GOstats to test gene lists for GO term association

1 reference

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Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques

1 reference

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Histone H3 Lys 4 methylation: caught in a bind?

1 reference

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27 May 2018

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

1 reference

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27 May 2018

Computational prediction of methylation status in human genomic sequences

1 reference

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

1 reference

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CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure

1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

1 reference

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1 reference

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1 reference

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Methyltransferase recruitment and DNA hypermethylation of target promoters by an oncogenic transcription factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

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MethDB--a public database for DNA methylation data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

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The human factors YY1 and LSF repress the human immunodeficiency virus type 1 long terminal repeat via recruitment of histone deacetylase 1.

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847772

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/24149073

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.155960.113

1 reference

Europe PubMed Central

PMC publication ID

8 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

8 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

8 November 2017

ResearchGate publication ID

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