(Q42939491)

11 November 2017

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome (English)

1 reference

11 November 2017

Burkhard Morgenstern

3

0 references

author name string

Mario Stanke

series ordinal

1

1 reference

PMCID

1810548

11 November 2017

Ana Tzvetkova

series ordinal

2

1 reference

11 November 2017

7 August 2006

1 reference

11 November 2017

1 reference

11 November 2017

7 Suppl 1

1 reference

11 November 2017

S11.1-8

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2006-7-s1-s11

11 November 2017

0 references

cites work

EGASP: the human ENCODE Genome Annotation Assessment Project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

AUGUSTUS: ab initio prediction of alternative transcripts

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

Fast and sensitive multiple alignment of large genomic sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

Gene prediction with a hidden Markov model and a new intron submodel

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

Human-mouse alignments with BLASTZ

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

BLAT—The BLAST-Like Alignment Tool

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

Integrating genomic homology into gene structure prediction.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

An assessment of gene prediction accuracy in large DNA sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

Using database matches with for HMMGene for automated gene detection in Drosophila

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

GeneMark.hmm: new solutions for gene finding

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

Prediction of complete gene structures in human genomic DNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

A generalized hidden Markov model for the recognition of human genes in DNA.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

EGASP: collaboration through competition to find human genes.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

ExonHunter: a comprehensive approach to gene finding.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810548

Competition boosts bid to find human genes

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16925833

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

gff2ps: visualizing genomic annotations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16925833

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2006-7-S1-S11

1 reference

PMCID

1810548

Dimensions Publication ID

11 November 2017

0 references

1 reference

11 November 2017

1 reference

PMCID

1810548