(Q42945518)

reason for preferred rank

11 November 2017

title

Thermodynamics of Peptide−RNA Recognition: The Binding of a Tat Peptide to TAR RNA (English)

1 reference

17 June 2024

Thermodynamics of peptide-RNA recognition: the binding of a Tat peptide to TAR RNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687526

reference URL

17 June 2024

0 references

3

Souvik Maiti

1 reference

11 November 2017

Hemant Suryawanshi

1

1 reference

11 November 2017

Harshana Sabharwal

2

1 reference

11 November 2017

language of work or name

English

0 references

publication date

1 September 2010

1 reference

11 November 2017

2 September 2010

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20687526

reference URL

full work available at URL

17 June 2024

https://pubs.acs.org/doi/pdf/10.1021/jp1000545

1 reference

Journal of Physical Chemistry B

17 June 2024

published in

1 reference

11 November 2017

volume

114

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11 November 2017

issue

34

1 reference

11 November 2017

page(s)

11155-11163

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Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif

11 November 2017

cites work

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RNA recognition: a family matter?

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Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

17 June 2024

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Characterization of the solution conformations of unbound and Tat peptide-bound forms of HIV-1 TAR RNA

17 June 2024

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The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein

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Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex

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Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex

17 June 2024

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Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples

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Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex

17 June 2024

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13

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Bayer P.

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1 reference

NMR structure of the bacteriophage lambda N peptide/boxB RNA complex: recognition of a GNRA fold by an arginine-rich motif

17 June 2024

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1 reference

Solution structure of P22 transcriptional antitermination N peptide-boxB RNA complex

17 June 2024

15

1 reference

Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex

17 June 2024

16

1 reference

RNA architecture dictates the conformations of a bound peptide

17 June 2024

17

1 reference

Solution structure of the HIV-2 TAR-argininamide complex

17 June 2024

18

1 reference

Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy

17 June 2024

19

1 reference

High affinity binding of TAR RNA by the human immunodeficiency virus type-1 tat protein requires base-pairs in the RNA stem and amino acid residues flanking the basic region

17 June 2024

20

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Tat is required for efficient HIV-1 reverse transcription

17 June 2024

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Salt-dependent conformational transitions in the self-complementary deoxydodecanucleotide d(CGCAATTCGCG): evidence for hairpin formation

17 June 2024

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Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

17 June 2024

23

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Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity

17 June 2024

24

1 reference

Thermodynamics of aminoglycoside-rRNA recognition: the binding of neomycin-class aminoglycosides to the A site of 16S rRNA.

17 June 2024

26

1 reference

Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 TAR RNA

17 June 2024

27

1 reference

Differential modes of recognition in N peptide-boxB complexes

17 June 2024

28

1 reference

Achieving Specificity in Selected and Wild-Type N Peptide−RNA Complexes: The Importance of Discrimination against Noncognate RNA Targets

17 June 2024

29

1 reference

Arginine-rich motifs present multiple interfaces for specific binding by RNA.

17 June 2024

31

1 reference

Coupling of drug protonation to the specific binding of aminoglycosides to the A site of 16 S rRNA: elucidation of the number of drug amino groups involved and their identities

17 June 2024

32

1 reference

Fluorescence-based approach for detecting and characterizing antibiotic-induced conformational changes in ribosomal RNA: comparing aminoglycoside binding to prokaryotic and eukaryotic ribosomal RNA sequences.

17 June 2024

33

1 reference

Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding.

17 June 2024

34

1 reference

Thermodynamics of specific and non-specific DNA binding by the c-Myb DNA-binding domain

17 June 2024

35

1 reference

A highly salt-dependent enthalpy change for Escherichia coli SSB protein-nucleic acid binding due to ion-protein interactions

17 June 2024

36

1 reference

Limiting Laws and Counterion Condensation in Polyelectrolyte Solutions I. Colligative Properties

17 June 2024

37

1 reference

Ion effects on ligand-nucleic acid interactions

17 June 2024

38

1 reference

Thermodynamic extent of counterion release upon binding oligolysines to single-stranded nucleic acids

17 June 2024

39

1 reference

Thermodynamics of single-stranded RNA binding to oligolysines containing tryptophan

17 June 2024

40

1 reference

Thermodynamics of single-stranded RNA and DNA interactions with oligolysines containing tryptophan. Effects of base composition

17 June 2024

41

1 reference

Analysis of arginine-rich peptides from the HIV Tat protein reveals unusual features of RNA-protein recognition

17 June 2024

42

1 reference

Specific binding of arginine to TAR RNA

17 June 2024

43

1 reference

Thermodynamic profiling of HIV RREIIB RNA-zinc finger interactions

17 June 2024

44

1 reference

Parsing free energies of drug-DNA interactions.

17 June 2024

45

1 reference

Hydrostatic and osmotic pressure as tools to study macromolecular recognition

17 June 2024

46

1 reference

Macromolecules and water: probing with osmotic stress

17 June 2024

47

1 reference

16 Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA

17 June 2024

48

1 reference

A thermodynamic signature for drug-DNA binding mode

17 June 2024

49

1 reference

17 June 2024

Identifiers

DOI

10.1021/JP1000545

1 reference

11 November 2017

1 reference