(Q43023721)

12 November 2017

title

On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes (English)

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12 November 2017

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Surajit Basak

1

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12 November 2017

Sujata Roy

series ordinal

2

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12 November 2017

Tapash Chandra Ghosh

series ordinal

3

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12 November 2017

language of work or name

English

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publication date

29 November 2007

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12 November 2017

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12 November 2017

volume

581

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12 November 2017

issue

30

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12 November 2017

page(s)

5825-5830

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Codon catalog usage and the genome hypothesis

12 November 2017

cites work

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Codon catalog usage is a genome strategy modulated for gene expressivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Codon usage in bacteria: correlation with gene expressivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Gene expressivity is the main factor in dictating the codon usage variation among the genes in Pseudomonas aeruginosa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

On the origin of genomic adaptation at high temperature for prokaryotic organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Relationship between G + C in silent sites of codons and amino acid composition of human proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Secondary structure of MS2 phage RNA and bias in code word usage

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Equal G and C contents in histone genes indicate selection pressures on mRNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Noise in eukaryotic gene expression

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Synonymous codon usage is subject to selection in thermophilic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Ribosome-mediated translational pause and protein domain organization

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Protein secondary structural types are differentially coded on messenger RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Consecutive low-usage leucine codons block translation only when near the 5' end of a message in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Co-transcriptional folding is encoded within RNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

A comparative method for finding and folding RNA secondary structures within protein-coding regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Noncoding RNA genes identified in AT-rich hyperthermophiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Use and misuse of correspondence analysis in codon usage studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Global mRNA stability is not associated with levels of gene expression in Drosophila melanogaster but shows a negative correlation with codon bias.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

The relationship among gene expression, folding free energy and codon usage bias in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

The nonrandom location of synonymous codons suggests that reading frame-independent forces have patterned codon preferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Mammalian mutation pressure, synonymous codon choice, and mRNA degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Reinvestigating the codon and amino acid usage of S. cerevisiae genome: a new insight from protein secondary structure analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Translational selection and molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

10.1016/J.FEBSLET.2007.11.054

21 January 2018

Identifiers

DOI

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release_hfizgqjfrfdo5cq3tjv76vfbgu

12 November 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/hfizgqjfrfdo5cq3tjv76vfbgu

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference